C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroligin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065858 Nlgn3-001 ENSMUSG00000031302 10090 + X:101299210-101325963 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000065858
Transcript ID Brain
ENSMUST00000065858 8.842±5.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057X CIL_00057X_0002 CGP X:101274030-101325963
CIL_00057N CIL_00057N_0002 CGP X:101299168-101385629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002087 IGI regulation of respiratory gaseous exchange by neurological system process
GO:0004872 IBA receptor activity
GO:0005515 IEA protein binding
GO:0005887 IBA:ISS integral component of plasma membrane
GO:0006898 ISS receptor-mediated endocytosis
GO:0007155 IEA cell adhesion
GO:0007158 ISS neuron cell-cell adhesion
GO:0007416 IBA synapse assembly
GO:0007612 IEA learning
GO:0008542 IMP visual learning
GO:0009986 IBA:ISS cell surface
GO:0030054 IEA cell junction
GO:0030139 ISS endocytic vesicle
GO:0030534 IEA adult behavior
GO:0035176 IMP social behavior
GO:0042043 IBA:ISS neurexin family protein binding
GO:0045202 IBA synapse
GO:0048675 ISS axon extension
GO:0048709 IMP oligodendrocyte differentiation
GO:0050804 IGI regulation of synaptic transmission
GO:0050808 ISO synapse organization
GO:0050839 ISS cell adhesion molecule binding
GO:0051965 ISS positive regulation of synapse assembly
GO:0051966 IMP regulation of synaptic transmission, glutamatergic
GO:0051968 IMP positive regulation of synaptic transmission, glutamatergic
GO:0060024 ISS rhythmic synaptic transmission
GO:0060076 ISS excitatory synapse
GO:0060079 IMP regulation of excitatory postsynaptic membrane potential
GO:0060080 IMP regulation of inhibitory postsynaptic membrane potential
GO:0061001 IMP regulation of dendritic spine morphogenesis
GO:0071625 IEA vocalization behavior
GO:0097104 IMP postsynaptic membrane assembly
GO:0097105 ISS presynaptic membrane assembly
GO:1900271 IMP regulation of long-term synaptic potentiation
GO:2000310 IMP regulation of N-methyl-D-aspartate selective glutamate receptor activity
GO:2000311 IMP regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:2000331 IMP regulation of terminal button organization
GO:2000463 IMP positive regulation of excitatory postsynaptic membrane potential
GO:2000969 IMP positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358741 NLGN3-002 protein_coding Homo_sapiens 0 3068
ENST00000374051 NLGN3-001 protein_coding Homo_sapiens 0 4867
ENST00000395855 NLGN3-003 protein_coding Homo_sapiens 0 1587
ENST00000476589 NLGN3-004 processed_transcript Homo_sapiens 0 3783
ENST00000536169 NLGN3-201 protein_coding Homo_sapiens 0 3672
ENST00000575978 EIF4A3-002 retained_intron Homo_sapiens 0.00007 55
ENST00000612180 NLGN3-202 protein_coding Homo_sapiens 0 4855

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