C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368881 PSMD4-002 ENSG00000159352 9606 + 1:151254709-151267459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000368881
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000368881 12.328±0.00 13.758±0.00 13.259±0.00 23.293±0.00 17.571±0.00 16.479±0.00 22.029±0.00 8.696±0.00 14.013±0.00 24.571±0.00 15.404±5.67 17.357±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LW CIL_0000LW_0003 CGP 1:151197949-151267479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008540 IEA proteasome regulatory particle, base subcomplex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071664 Psmd4-001 protein_coding Mus_musculus 0 1544
ENSMUST00000107237 Psmd4-002 protein_coding Mus_musculus 0 1515
ENSMUST00000117355 Psmd4-004 protein_coding Mus_musculus 0 1286
ENSMUST00000136868 Psmd4-005 retained_intron Mus_musculus 0 1227
ENSMUST00000140348 Psmd4-008 protein_coding Mus_musculus 0 636
ENSMUST00000140280 Psmd4-003 retained_intron Mus_musculus 0 534

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