C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071750 Col12a1-001 ENSMUSG00000032332 10090 - 9:79598991-79718518 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071750
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071750 1.360±1.14 0.363±0.00 7.274±1.63 1.512±1.14 1.837±0.63 4.342±0.72 0.190±0.05 0.728±0.28 0.224±0.17 2.568±1.26 0.311±0.13 2.843±1.02 3.606±1.72 1.184±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061X CIL_00061X_0003 CGP 9:78615546-79718831
CIL_000624 CIL_000624_0004 CGP 9:79598991-79759853

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005615 IEA extracellular space
GO:0007155 IEA cell adhesion
GO:0031012 IDA extracellular matrix
GO:0031982 IEA vesicle
GO:0035987 IEA endodermal cell differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000025926 col12a1b-201 protein_coding Danio_rerio 2e-24 121
ENSDART00000154728 col12a1a-001 protein_coding Danio_rerio 3e-17 97
ENST00000322507 COL12A1-001 protein_coding Homo_sapiens 0 11520
ENST00000345356 COL12A1-002 protein_coding Homo_sapiens 0 6866
ENST00000416123 COL12A1-009 protein_coding Homo_sapiens 0 9158
ENST00000419671 COL12A1-007 protein_coding Homo_sapiens 0 1555
ENST00000425443 COL12A1-008 protein_coding Homo_sapiens 0 2728
ENST00000474564 COL12A1-005 retained_intron Homo_sapiens 0 440
ENST00000483888 COL12A1-003 protein_coding Homo_sapiens 0 10740
ENST00000486533 COL12A1-004 retained_intron Homo_sapiens 0 1591
ENST00000493109 COL12A1-006 protein_coding Homo_sapiens 0 808
ENST00000511023 COL12A1-010 processed_transcript Homo_sapiens 0 640
ENST00000611354 COL12A1-201 protein_coding Homo_sapiens 0 11520
ENST00000615798 COL12A1-202 protein_coding Homo_sapiens 0 11510

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