C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 4963
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072718 Gm4963-001 ENSMUSG00000063739 10090 - 5:137993047-137993424 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000072718
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000072718 0.498±0.30 0.108±0.03 0.069±0.00 0.491±0.07 0.465±0.02 0.452±0.27 0.701±0.40 2.929±2.63 0.317±0.01 0.749±0.48 0.023±0.00 0.700±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000404787 RP1-140K8.2-001 processed_pseudogene Homo_sapiens 0 359
ENST00000427600 RP11-543B16.1-001 processed_pseudogene Homo_sapiens 0 340
ENST00000469891 CTD-2287O16.1-001 processed_pseudogene Homo_sapiens 0 394
ENST00000476147 RP11-587D21.1-001 processed_pseudogene Homo_sapiens 0 396
ENST00000524864 RPS25-002 retained_intron Homo_sapiens 0 207
ENST00000527673 RPS25-001 protein_coding Homo_sapiens 0 427
ENST00000527791 RPS25-003 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000527853 RPS25-008 retained_intron Homo_sapiens 0 320
ENST00000532567 RPS25-005 nonsense_mediated_decay Homo_sapiens 0 318

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