C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon regulatory factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076521 Irf6-001 ENSMUSG00000026638 10090 + 1:193153112-193172042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076521
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076521 8.393±8.05 0.146±0.03 10.761±0.22 0.512±0.03 6.084±0.65 35.735±2.64 0.592±0.08 7.209±0.30 6.958±4.48 9.353±0.20 0.273±0.07 11.775±4.14 7.751±9.08 1.984±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZL CIL_0007ZL_0002 VISTA 1:192841048-193441723
CIL_00089N CIL_00089N_0002 VISTA 1:193149329-193750185

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000975 IEA regulatory region DNA binding
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007050 IEA cell cycle arrest
GO:0008285 IGI negative regulation of cell proliferation
GO:0030216 IMP keratinocyte differentiation
GO:0043588 IMP skin development
GO:0043616 IMP keratinocyte proliferation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048468 IMP cell development
GO:0060644 IEP mammary gland epithelial cell differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000063562 irf6-201 protein_coding Danio_rerio 0 243
ENSDART00000061535 irf6-001 protein_coding Danio_rerio 0 243
ENST00000249375 IRF5-201 protein_coding Homo_sapiens 0.00000000000006 84
ENST00000357234 IRF5-002 protein_coding Homo_sapiens 0.00000000000004 84
ENST00000367021 IRF6-001 protein_coding Homo_sapiens 0 2021
ENST00000402030 IRF5-001 protein_coding Homo_sapiens 0.00000000000006 84
ENST00000456314 IRF6-002 protein_coding Homo_sapiens 0 1101
ENST00000461416 IRF5-006 retained_intron Homo_sapiens 0.00000000000002 84
ENST00000464557 IRF5-010 protein_coding Homo_sapiens 0.00000000000001 84
ENST00000465603 IRF5-007 nonsense_mediated_decay Homo_sapiens 0.00000000000005 84
ENST00000467002 IRF5-011 protein_coding Homo_sapiens 0.0000002 60
ENST00000473745 IRF5-009 protein_coding Homo_sapiens 0.00000000000005 84
ENST00000473787 IRF5-012 nonsense_mediated_decay Homo_sapiens 0.0000002 60
ENST00000477535 IRF5-005 protein_coding Homo_sapiens 0.00000000000003 84
ENST00000479582 IRF5-008 protein_coding Homo_sapiens 0.00000000000001 84
ENST00000488569 IRF5-004 retained_intron Homo_sapiens 0.00000000000002 84
ENST00000489702 IRF5-003 protein_coding Homo_sapiens 0.00000000000002 84
ENST00000542854 IRF6-201 protein_coding Homo_sapiens 0 1781
ENST00000613821 IRF5-202 protein_coding Homo_sapiens 0.00000000000001 84
ENST00000619830 IRF5-203 protein_coding Homo_sapiens 0.00000000000004 84

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