C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brain and reproductive organ-expressed protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080598 Bre-001 ENSMUSG00000052139 10090 + 5:31697684-32084962 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080598
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080598 23.870±7.01 46.027±5.64 27.641±2.63 10.379±4.29 18.464±0.90 11.352±1.04 9.433±1.08 20.097±2.06 10.681±4.15 14.974±1.71 8.398±1.57 15.968±6.16 9.113±4.03 28.989±4.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013J CIL_00013J_0002 CGP 5:31526995-31701972
CIL_00013K CIL_00013K_0002 CGP 5:31596935-31701972
CIL_0003JP CIL_0003JP_0003 CGP 5:31624439-32084962
CIL_0003JO CIL_0003JO_0003 CGP 5:31697684-32157831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000152 ISS nuclear ubiquitin ligase complex
GO:0005164 IDA tumor necrosis factor receptor binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006302 ISS double-strand break repair
GO:0006915 IEA apoptotic process
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0010212 ISS response to ionizing radiation
GO:0016568 IEA chromatin modification
GO:0031572 ISS G2 DNA damage checkpoint
GO:0031593 ISS polyubiquitin binding
GO:0045739 ISS positive regulation of DNA repair
GO:0070531 ISS BRCA1-A complex
GO:0070552 ISS BRISC complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342045 BRE-004 protein_coding Homo_sapiens 0 1664
ENST00000344773 BRE-001 protein_coding Homo_sapiens 0 1567
ENST00000361704 BRE-005 protein_coding Homo_sapiens 0 1472
ENST00000379624 BRE-003 protein_coding Homo_sapiens 0 1784
ENST00000379629 BRE-009 protein_coding Homo_sapiens 0 837
ENST00000379632 BRE-002 protein_coding Homo_sapiens 0 1415
ENST00000436924 BRE-006 protein_coding Homo_sapiens 0 521
ENST00000448427 MRPL33-006 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000492702 BRE-007 retained_intron Homo_sapiens 0 287
ENST00000496951 BRE-008 retained_intron Homo_sapiens 0 337
ENST00000603461 BRE-010 processed_transcript Homo_sapiens 0 398
ENST00000604932 BRE-011 non_stop_decay Homo_sapiens 0 472

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