C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 10110
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081204 Gm10110-201 ENSMUSG00000062093 10090 - 14:89896223-89898466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081204 0.892±0.53 0.318±0.15 0.540±0.29 0.440±0.23 0.837±0.45 0.641±0.24 1.831±0.31 0.386±0.19 1.453±1.95 0.394±0.14 0.854±0.27 1.573±1.09 0.126±0.07 0.087±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000908 CIL_000908_0002 VISTA 14:89562491-90163428

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082327 pabpc4-001 protein_coding Danio_rerio 0 211
ENST00000372856 PABPC4-004 protein_coding Homo_sapiens 0 1877
ENST00000372857 PABPC4-001 protein_coding Homo_sapiens 0 1884
ENST00000372858 PABPC4-002 protein_coding Homo_sapiens 0 1877
ENST00000372862 PABPC4-003 protein_coding Homo_sapiens 0 2636
ENST00000414338 RP11-393N21.1-001 processed_pseudogene Homo_sapiens 8.40779e-45 183
ENST00000421687 PABPC4-017 protein_coding Homo_sapiens 0 1483
ENST00000437136 PABPC4-013 protein_coding Homo_sapiens 0 459
ENST00000451091 PABPC4-011 protein_coding Homo_sapiens 0 505
ENST00000468476 PABPC4-006 retained_intron Homo_sapiens 1e-32 147
ENST00000470443 PABPC4-007 nonsense_mediated_decay Homo_sapiens 0 965
ENST00000474378 PABPC4-008 protein_coding Homo_sapiens 0 632
ENST00000482028 PABPC4-012 retained_intron Homo_sapiens 0 401
ENST00000483770 PABPC4-016 retained_intron Homo_sapiens 0 342
ENST00000492468 PABPC4-005 retained_intron Homo_sapiens 0 680
ENST00000492519 PABPC4-010 retained_intron Homo_sapiens 0 342
ENST00000513632 PABPC4-020 retained_intron Homo_sapiens 0 248
ENST00000525045 PABPC4-023 retained_intron Homo_sapiens 0 399
ENST00000525669 PABPC4-022 retained_intron Homo_sapiens 0 532
ENST00000525751 PABPC4-019 retained_intron Homo_sapiens 0 479
ENST00000527718 PABPC4-021 protein_coding Homo_sapiens 0 671
ENST00000529216 PABPC4-025 processed_transcript Homo_sapiens 0 209
ENST00000530186 PABPC4-024 protein_coding Homo_sapiens 0 298
ENST00000549280 RP11-813P10.2-001 processed_pseudogene Homo_sapiens 0 403
ENST00000555663 CTD-2643K12.1-001 processed_pseudogene Homo_sapiens 0 448

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