C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 4 (inducible form)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000082327 pabpc4-001 ENSDARG00000059259 7955 - 17:25098084-25116603 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000082327
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000082327 3.106±0.47 576.459±350.55 14.027±15.14 1.334±0.00 471.621±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078734 Pabpc4-002 protein_coding Mus_musculus 0 771
ENSMUST00000080178 Pabpc4-001 protein_coding Mus_musculus 0 771
ENSMUST00000081204 Gm10110-201 protein_coding Mus_musculus 0 211
ENSMUST00000106241 Pabpc4-004 protein_coding Mus_musculus 0 771
ENSMUST00000106243 Pabpc4-003 protein_coding Mus_musculus 0 771
ENSMUST00000117060 Gm11841-001 processed_pseudogene Mus_musculus 2e-37 161
ENSMUST00000117339 Gm12626-001 processed_pseudogene Mus_musculus 4e-39 167
ENSMUST00000118386 Gm15332-001 unprocessed_pseudogene Mus_musculus 2e-31 139
ENSMUST00000119791 Gm12620-001 processed_pseudogene Mus_musculus 2e-37 161
ENSMUST00000119849 Gm12623-001 processed_pseudogene Mus_musculus 1e-39 169
ENSMUST00000120225 Gm15331-001 unprocessed_pseudogene Mus_musculus 2e-40 169
ENSMUST00000121408 Gm15329-001 unprocessed_pseudogene Mus_musculus 0.000000000000003 84
ENSMUST00000124991 Pabpc4-006 processed_transcript Mus_musculus 0 206
ENSMUST00000140182 Gm12612-001 processed_pseudogene Mus_musculus 1e-35 156
ENSMUST00000146156 Pabpc4-007 retained_intron Mus_musculus 0 206
ENSMUST00000171455 Gm17572-201 processed_pseudogene Mus_musculus 1.99993e-41 172
ENSMUST00000183940 Pabpc4-005 nonsense_mediated_decay Mus_musculus 0 390
ENST00000372856 PABPC4-004 protein_coding Homo_sapiens 0 837
ENST00000372857 PABPC4-001 protein_coding Homo_sapiens 0 837
ENST00000372858 PABPC4-002 protein_coding Homo_sapiens 0 837
ENST00000372862 PABPC4-003 protein_coding Homo_sapiens 0 837
ENST00000451091 PABPC4-011 protein_coding Homo_sapiens 0 294

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