C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000473394 RP11-268I9.1-001 ENSG00000243303 9606 - 18:21854640-21854987 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungOvaryTestisENST00000473394
Transcript ID Lung Ovary Testis
ENST00000473394 1.082±0.00 0.750±0.33 0.128±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084R CIL_00084R_0001 VISTA 18:21458991-22061961
CIL_0005NX CIL_0005NX_0001 CGP 18:21650897-21870957
CIL_0005NR CIL_0005NR_0001 CGP 18:21704957-22202528

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084445 Gm10154-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000121998 Rpl34-ps1-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000079085 Rpl34-002 protein_coding Mus_musculus 0 228
ENSMUST00000062601 Rpl34-001 protein_coding Mus_musculus 0 228
ENSMUST00000081679 Gm6404-201 processed_pseudogene Mus_musculus 0 224
ENSMUST00000135691 Rpl34-004 retained_intron Mus_musculus 2.99878e-43 178
ENSMUST00000133802 Rpl34-003 retained_intron Mus_musculus 9e-39 163

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