C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 1, catalytic subunit, gamma isozyme
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550261 PPP1CC-005 ENSG00000186298 9606 - 12:110719983-110730755 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000550261
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000550261 24.334±0.00 34.944±0.00 32.401±0.00 30.742±0.00 53.190±0.00 46.785±0.00 26.001±0.00 9.164±0.00 48.832±0.00 61.953±0.00 34.512±0.00 90.333±39.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0001 VISTA 12:110628804-111231731

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086294 Ppp1cc-002 protein_coding Mus_musculus 0 946
ENSMUST00000118909 AC164158.1-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000102528 Ppp1cc-001 protein_coding Mus_musculus 0 660
ENSMUST00000122076 Gm14122-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000132555 Ppp1cc-005 retained_intron Mus_musculus 0 545
ENSMUST00000151184 Ppp1cc-006 processed_transcript Mus_musculus 0 544
ENSMUST00000118774 Gm5754-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000121207 Gm11848-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000128309 Ppp1cc-009 retained_intron Mus_musculus 0 412
ENSDART00000092906 ppp1cab-001 protein_coding Danio_rerio 0 267
ENSMUST00000134719 Ppp1cc-008 processed_transcript Mus_musculus 0 255
ENSMUST00000142562 Ppp1cc-007 retained_intron Mus_musculus 0 233

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