C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088402 Hdac7-005 ENSMUSG00000022475 10090 - 15:97792681-97831767 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000088402
Transcript ID Adipose Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088402 10.356±0.33 12.143±1.13 11.523±1.74 11.583±0.00 6.754±1.15 3.122±0.00 17.387±0.25 3.862±0.32 5.077±0.00 1.427±0.55 1.233±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OC CIL_0002OC_0002 CGP 15:97744770-97792692
CIL_0003DF CIL_0003DF_0003 CGP 15:97784355-97844502
CIL_0003DI CIL_0003DI_0003 CGP 15:97792664-97910630

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001570 IMP vasculogenesis
GO:0003682 IDA chromatin binding
GO:0003714 IDA transcription corepressor activity
GO:0004407 TAS histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006954 TAS inflammatory response
GO:0007043 IMP cell-cell junction assembly
GO:0007399 TAS nervous system development
GO:0008134 TAS transcription factor binding
GO:0016568 TAS chromatin modification
GO:0016575 TAS histone deacetylation
GO:0030183 TAS B cell differentiation
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0042113 TAS B cell activation
GO:0045843 TAS negative regulation of striated muscle tissue development
GO:0045892 TAS negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0071889 ISS 14-3-3 protein binding
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000080059 HDAC7-001 protein_coding Homo_sapiens 0 2206
ENST00000225983 HDAC5-003 protein_coding Homo_sapiens 0 409
ENST00000354334 HDAC7-002 protein_coding Homo_sapiens 0 2909
ENST00000380610 HDAC7-029 protein_coding Homo_sapiens 0 1991
ENST00000417107 HDAC7-009 protein_coding Homo_sapiens 0 364
ENST00000417902 HDAC7-018 protein_coding Homo_sapiens 0 699
ENST00000421231 HDAC7-016 protein_coding Homo_sapiens 0 449
ENST00000422254 HDAC7-021 protein_coding Homo_sapiens 0 392
ENST00000427332 HDAC7-013 protein_coding Homo_sapiens 0 2206
ENST00000430670 HDAC7-019 protein_coding Homo_sapiens 0 394
ENST00000433685 HDAC7-011 protein_coding Homo_sapiens 0 305
ENST00000434070 HDAC7-014 protein_coding Homo_sapiens 0 492
ENST00000440293 HDAC7-020 protein_coding Homo_sapiens 0 580
ENST00000445237 HDAC7-015 protein_coding Homo_sapiens 0 196
ENST00000447463 HDAC7-012 protein_coding Homo_sapiens 0 490
ENST00000450805 HDAC7-010 protein_coding Homo_sapiens 0 383
ENST00000459625 HDAC7-007 retained_intron Homo_sapiens 0 1053
ENST00000463732 HDAC7-023 retained_intron Homo_sapiens 0 438
ENST00000470668 HDAC7-005 retained_intron Homo_sapiens 0 1666
ENST00000471235 HDAC7-008 retained_intron Homo_sapiens 0 464
ENST00000477203 HDAC7-030 nonsense_mediated_decay Homo_sapiens 0 2878
ENST00000477937 HDAC7-026 processed_transcript Homo_sapiens 0 405
ENST00000485796 HDAC7-022 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000488927 HDAC7-027 nonsense_mediated_decay Homo_sapiens 0 715
ENST00000491464 HDAC7-024 retained_intron Homo_sapiens 0 252
ENST00000547259 HDAC7-004 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000548080 HDAC7-031 protein_coding Homo_sapiens 0 944
ENST00000548938 HDAC7-003 nonsense_mediated_decay Homo_sapiens 0 1663
ENST00000552960 HDAC7-028 protein_coding Homo_sapiens 0 2206
ENST00000586802 HDAC5-002 protein_coding Homo_sapiens 0 409
ENST00000588419 HDAC5-012 retained_intron Homo_sapiens 7e-38 161
ENST00000592385 HDAC5-004 retained_intron Homo_sapiens 3e-37 161
ENST00000593013 HDAC5-005 retained_intron Homo_sapiens 6e-37 159

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