C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type VIII, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096198 Scn8a-202 ENSMUSG00000023033 10090 + 15:100933429-100940798 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyOvaryPlacentaENSMUST00000096198
Transcript ID Adipose Bladder Breast Colon Heart Kidney Ovary Placenta
ENSMUST00000096198 0.129±0.01 0.120±0.00 0.483±0.04 0.057±0.00 0.027±0.00 0.150±0.08 0.453±0.28 0.326±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JW CIL_0006JW_0002 CGP 15:100761747-101045929

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IBA plasma membrane
GO:0007517 IMP muscle organ development
GO:0007605 IMP sensory perception of sound
GO:0007626 IMP locomotory behavior
GO:0007628 IMP adult walking behavior
GO:0008344 IMP adult locomotory behavior
GO:0009636 IDA response to toxic substance
GO:0016020 IDA membrane
GO:0019228 IBA neuronal action potential
GO:0030425 IDA dendrite
GO:0034706 IPI sodium channel complex
GO:0043025 IDA neuronal cell body
GO:0050905 IMP neuromuscular process
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354534 SCN8A-001 protein_coding Homo_sapiens 0 483
ENST00000355133 SCN8A-005 protein_coding Homo_sapiens 0 405
ENST00000545061 SCN8A-201 protein_coding Homo_sapiens 0 483
ENST00000550891 SCN8A-003 protein_coding Homo_sapiens 0 484
ENST00000599343 SCN8A-202 protein_coding Homo_sapiens 0 483

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