C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage gated, type VIII, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000545061 SCN8A-201 ENSG00000196876 9606 + 12:51591236-51812864 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000545061
Transcript ID Adipose Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000545061 0.024±0.00 0.061±0.00 0.234±0.05 0.010±0.00 0.055±0.02 0.052±0.00 0.014±0.00 0.085±0.02 0.036±0.01 0.573±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JW CIL_0006JW_0001 CGP 12:51391317-51812864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA voltage-gated sodium channel activity
GO:0005515 IEA protein binding
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 7345
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0 4996
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 4891
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 2946
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 1297
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 1297
ENSMUST00000065196 Scn5a-201 protein_coding Mus_musculus 0 976
ENSMUST00000120420 Scn5a-002 protein_coding Mus_musculus 0 976
ENSMUST00000117911 Scn5a-001 protein_coding Mus_musculus 0 976
ENSDART00000097722 SCN11A-201 protein_coding Danio_rerio 0 608
ENSMUST00000021056 Scn4a-001 protein_coding Mus_musculus 0 514
ENSMUST00000096198 Scn8a-202 protein_coding Mus_musculus 0 483
ENSDART00000104004 scn4ab-201 protein_coding Danio_rerio 0 477
ENSDART00000044157 scn4ab-001 protein_coding Danio_rerio 0 477
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 472
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 472
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 444
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 438
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 383
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 383
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 383
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 383
ENSMUST00000138368 Scn2a1-003 processed_transcript Mus_musculus 3e-23 117
ENSMUST00000006311 Tead4-001 protein_coding Mus_musculus 0.000004 60

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