| Transcript ID | Bladder | Ovary |
|---|---|---|
| ENST00000550891 | 0.755±0.00 | 0.240±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | sodium channel, voltage gated, type VIII, alpha subunit | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000550891  |
SCN8A-003 |
ENSG00000196876 |
9606 | + |
12:51590926-51766251  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0006JW | CIL_0006JW_0001 | CGP | 12:51391317-51812864 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001518 | IEA | voltage-gated sodium channel complex |
| GO:0005216 | IEA | ion channel activity |
| GO:0005248 | IEA | voltage-gated sodium channel activity |
| GO:0006811 | IEA | ion transport |
| GO:0016020 | IEA | membrane |
| GO:0034765 | IEA | regulation of ion transmembrane transport |
| GO:0035725 | IEA | sodium ion transmembrane transport |
| GO:0055085 | IEA | transmembrane transport |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000108910
|
Scn8a-205 | protein_coding | Mus_musculus | 0 | 3816 |
|
ENSMUST00000082209
|
Scn8a-201 | protein_coding | Mus_musculus | 0 | 3746 |
|
ENSMUST00000108909
|
Scn8a-204 | protein_coding | Mus_musculus | 0 | 3328 |
|
ENSMUST00000108908
|
Scn8a-203 | protein_coding | Mus_musculus | 0 | 1338 |
|
ENSDART00000022761
|
scn8ab-201 | protein_coding | Danio_rerio | 0 | 569 |
|
ENSDART00000151299
|
scn8ab-001 | protein_coding | Danio_rerio | 0 | 569 |
|
ENSMUST00000066432
|
Scn3a-201 | protein_coding | Mus_musculus | 0 | 532 |
|
ENSMUST00000100069
|
Scn3a-001 | protein_coding | Mus_musculus | 0 | 527 |
|
ENSMUST00000112371
|
Scn1a-201 | protein_coding | Mus_musculus | 0 | 512 |
|
ENSMUST00000077489
|
Scn1a-004 | protein_coding | Mus_musculus | 0 | 512 |
|
ENSMUST00000112366
|
Scn1a-001 | protein_coding | Mus_musculus | 0 | 512 |
|
ENSMUST00000094951
|
Scn1a-005 | protein_coding | Mus_musculus | 0 | 505 |
|
ENSMUST00000096198
|
Scn8a-202 | protein_coding | Mus_musculus | 0 | 484 |
|
ENSMUST00000021056
|
Scn4a-001 | protein_coding | Mus_musculus | 0 | 451 |
|
ENSDART00000104004
|
scn4ab-201 | protein_coding | Danio_rerio | 0 | 420 |
|
ENSDART00000044157
|
scn4ab-001 | protein_coding | Danio_rerio | 0 | 420 |
|
ENSMUST00000169900
|
Scn9a-203 | protein_coding | Mus_musculus | 0 | 399 |
|
ENSMUST00000144254
|
Scn2a1-002 | protein_coding | Mus_musculus | 0 | 348 |
|
ENSDART00000097722
|
SCN11A-201 | protein_coding | Danio_rerio | 0 | 279 |
|
ENSMUST00000138368
|
Scn2a1-003 | processed_transcript | Mus_musculus | 0 | 250 |
