| Transcript ID | Colon | Testis |
|---|---|---|
| ENST00000355133 | 0.365±0.00 | 0.598±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | sodium channel, voltage gated, type VIII, alpha subunit | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000355133  |
SCN8A-005 |
ENSG00000196876 |
9606 | + |
12:51662818-51807429  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0006JW | CIL_0006JW_0001 | CGP | 12:51391317-51812864 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001518 | IEA | voltage-gated sodium channel complex |
| GO:0005216 | IEA | ion channel activity |
| GO:0005248 | IEA | voltage-gated sodium channel activity |
| GO:0006811 | IEA | ion transport |
| GO:0006814 | IEA | sodium ion transport |
| GO:0016020 | IEA | membrane |
| GO:0034765 | IEA | regulation of ion transmembrane transport |
| GO:0035725 | IEA | sodium ion transmembrane transport |
| GO:0055085 | IEA | transmembrane transport |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000108909
|
Scn8a-204 | protein_coding | Mus_musculus | 0 | 6953 |
|
ENSMUST00000082209
|
Scn8a-201 | protein_coding | Mus_musculus | 0 | 4918 |
|
ENSMUST00000108910
|
Scn8a-205 | protein_coding | Mus_musculus | 0 | 4813 |
|
ENSMUST00000108908
|
Scn8a-203 | protein_coding | Mus_musculus | 0 | 2555 |
|
ENSDART00000022761
|
scn8ab-201 | protein_coding | Danio_rerio | 0 | 1297 |
|
ENSDART00000151299
|
scn8ab-001 | protein_coding | Danio_rerio | 0 | 1297 |
|
ENSMUST00000065196
|
Scn5a-201 | protein_coding | Mus_musculus | 0 | 976 |
|
ENSMUST00000120420
|
Scn5a-002 | protein_coding | Mus_musculus | 0 | 976 |
|
ENSMUST00000117911
|
Scn5a-001 | protein_coding | Mus_musculus | 0 | 976 |
|
ENSDART00000097722
|
SCN11A-201 | protein_coding | Danio_rerio | 0 | 608 |
|
ENSMUST00000021056
|
Scn4a-001 | protein_coding | Mus_musculus | 0 | 514 |
|
ENSDART00000104004
|
scn4ab-201 | protein_coding | Danio_rerio | 0 | 477 |
|
ENSDART00000044157
|
scn4ab-001 | protein_coding | Danio_rerio | 0 | 477 |
|
ENSMUST00000100067
|
Scn2a1-201 | protein_coding | Mus_musculus | 0 | 472 |
|
ENSMUST00000028377
|
Scn2a1-001 | protein_coding | Mus_musculus | 0 | 472 |
|
ENSMUST00000066432
|
Scn3a-201 | protein_coding | Mus_musculus | 0 | 444 |
|
ENSMUST00000100069
|
Scn3a-001 | protein_coding | Mus_musculus | 0 | 438 |
|
ENSMUST00000096198
|
Scn8a-202 | protein_coding | Mus_musculus | 0 | 405 |
|
ENSMUST00000100063
|
Scn9a-201 | protein_coding | Mus_musculus | 0 | 383 |
|
ENSMUST00000164384
|
Scn9a-202 | protein_coding | Mus_musculus | 0 | 383 |
|
ENSMUST00000112354
|
Scn9a-002 | protein_coding | Mus_musculus | 0 | 383 |
|
ENSMUST00000100064
|
Scn9a-001 | protein_coding | Mus_musculus | 0 | 383 |
|
ENSMUST00000138368
|
Scn2a1-003 | processed_transcript | Mus_musculus | 1e-23 | 117 |
