C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5-hydroxytryptamine (serotonin) receptor 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099505 Htr7-006 ENSMUSG00000024798 10090 - 19:35960315-36057373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000099505
Transcript ID Adrenal Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000099505 0.049±0.01 0.297±0.09 0.143±0.10 0.039±0.01 0.025±0.01 0.071±0.02 0.134±0.06 0.004±0.00 0.041±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PF CIL_0005PF_0003 CGP 19:34922358-36057507
CIL_0008BY CIL_0008BY_0002 VISTA 19:35829039-36429586
CIL_0005UK CIL_0005UK_0002 CGP 19:35958734-36104772

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004993 IEA serotonin receptor activity
GO:0006939 IEA smooth muscle contraction
GO:0007210 IEA serotonin receptor signaling pathway
GO:0007268 IEA synaptic transmission
GO:0007623 IEA circadian rhythm
GO:0016021 IEA integral component of membrane
GO:0042310 IEA vasoconstriction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277874 HTR7-002 protein_coding Homo_sapiens 0 1744
ENST00000336152 HTR7-001 protein_coding Homo_sapiens 0 1744
ENST00000371719 HTR7-003 protein_coding Homo_sapiens 0 1744
ENST00000538670 HTR7P1-001 transcribed_processed_pseudogene Homo_sapiens 0 1306
ENST00000624664 HTR7P1-002 TEC Homo_sapiens 0 1315

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