C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing (lysine methyltransferase) 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100709 Setd8-002 ENSMUSG00000049327 10090 + 5:124445493-124460883 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonLiverMuscleOvaryPlacentaENSMUST00000100709
Transcript ID Adipose Adrenal Bladder Brain Colon Liver Muscle Ovary Placenta
ENSMUST00000100709 7.774±0.00 8.325±1.16 5.621±0.00 4.807±0.00 15.549±2.99 1.935±0.34 11.711±1.44 11.358±1.22 12.911±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_000665 CIL_000665_0002 CGP 5:124368702-124462308
CIL_0003J0 CIL_0003J0_0002 CGP 5:124439930-124478366

Gene Ontology

GO IDEvidence TypeGO Description
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330479 SETD8-201 protein_coding Homo_sapiens 0 1210
ENST00000402868 SETD8-001 protein_coding Homo_sapiens 0 1210
ENST00000413684 AC027612.1-001 processed_pseudogene Homo_sapiens 0 1083
ENST00000437502 SETD8-005 protein_coding Homo_sapiens 0 933
ENST00000437519 SETD8-002 nonsense_mediated_decay Homo_sapiens 0 1212
ENST00000461103 SETD8-003 retained_intron Homo_sapiens 0 854
ENST00000478781 SETD8-007 processed_transcript Homo_sapiens 0 544
ENST00000485469 SETD8-006 processed_transcript Homo_sapiens 0 455
ENST00000623146 AL356585.3-201 pseudogene Homo_sapiens 0 1134

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