C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243103 HOXC12-001 ENSG00000123407 9606 + 12:53954834-53958956 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartMuscleOvaryPlacentaTestisENST00000243103
Transcript ID Adipose Adrenal Breast Heart Muscle Ovary Placenta Testis
ENST00000243103 0.941±0.00 1.156±0.00 0.167±0.00 0.084±0.00 0.019±0.00 0.542±0.61 0.136±0.11 0.132±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TP CIL_0002TP_0002 CGP 12:53938765-53958956
CIL_0002TO CIL_0002TO_0002 CGP 12:53954834-53977643

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055562 Hoxc12-001 protein_coding Mus_musculus 0 1321
ENSMUST00000101395 Hoxa4-001 protein_coding Mus_musculus 0.00000003 66
ENSDART00000015333 gbx2-001 protein_coding Danio_rerio 0.000005 58

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