C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101554 Ogdh-004 ENSMUSG00000020456 10090 + 11:6291666-6356578 protein_coding

Mus musculus EnsemblGRCm38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000101554
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000101554 27.089±11.57 131.242±18.80 67.230±24.00 27.451±12.05 196.825±42.56 57.972±13.31 16.367±3.34 33.511±5.38 22.934±10.79 3.810±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J7 CIL_0000J7_0002 CGP 11:6270369-6356642
CIL_0000J8 CIL_0000J8_0002 CGP 11:6291633-6406158

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004591 IEA:ISS oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0005739 IDA mitochondrion
GO:0006091 ISS generation of precursor metabolites and energy
GO:0006096 IEA glycolytic process
GO:0021695 IEP cerebellar cortex development
GO:0021756 IEP striatum development
GO:0021766 IEP hippocampus development
GO:0021794 IEP thalamus development
GO:0021860 IEP pyramidal neuron development
GO:0022028 IEP tangential migration from the subventricular zone to the olfactory bulb
GO:0030976 IEA thiamine pyrophosphate binding
GO:0031966 ISS mitochondrial membrane
GO:0034602 IDA oxoglutarate dehydrogenase (NAD+) activity
GO:0046872 IEA metal ion binding
GO:0061034 IEP olfactory bulb mitral cell layer development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000013485 ogdhb-201 protein_coding Danio_rerio 0 1637
ENSDART00000139214 ogdhb-001 protein_coding Danio_rerio 0 1637
ENSDART00000113009 OGDHL-201 protein_coding Danio_rerio 0 992
ENST00000222673 OGDH-001 protein_coding Homo_sapiens 0 3967
ENST00000419661 OGDH-008 protein_coding Homo_sapiens 0 950
ENST00000439616 OGDH-005 protein_coding Homo_sapiens 0 2811
ENST00000443864 OGDH-007 protein_coding Homo_sapiens 0 1701
ENST00000444676 OGDH-006 protein_coding Homo_sapiens 0 3155
ENST00000447398 OGDH-003 protein_coding Homo_sapiens 0 3188
ENST00000449767 OGDH-002 protein_coding Homo_sapiens 0 3701
ENST00000459672 OGDH-009 processed_transcript Homo_sapiens 0 658
ENST00000497326 OGDH-010 retained_intron Homo_sapiens 0 486

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