C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) III alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102668 Top3a-003 ENSMUSG00000002814 10090 - 11:60741891-60777265 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000102668
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000102668 0.867±0.39 1.248±0.56 0.860±0.08 0.719±0.00 0.263±0.01 0.553±0.00 0.442±0.13 3.179±0.09 0.824±0.39 1.315±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K3 CIL_0005K3_0002 CGP 11:60728398-60777365
CIL_00002B CIL_00002B_0003 CGP 11:60740058-60788287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003917 IEA DNA topoisomerase type I activity
GO:0005694 IEA chromosome
GO:0006265 IEA DNA topological change
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321105 TOP3A-001 protein_coding Homo_sapiens 0 2996
ENST00000461127 TOP3A-004 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000469739 TOP3A-003 retained_intron Homo_sapiens 0 1140
ENST00000472959 TOP3A-005 retained_intron Homo_sapiens 3e-23 113
ENST00000477508 TOP3A-006 retained_intron Homo_sapiens 0 329
ENST00000542570 TOP3A-201 protein_coding Homo_sapiens 0 2996
ENST00000580095 TOP3A-020 protein_coding Homo_sapiens 0 2940
ENST00000581536 TOP3A-012 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000582981 TOP3A-009 nonsense_mediated_decay Homo_sapiens 0 2639
ENST00000583328 TOP3A-018 retained_intron Homo_sapiens 0 453
ENST00000583804 TOP3A-013 retained_intron Homo_sapiens 0 1273
ENST00000584582 TOP3A-010 nonsense_mediated_decay Homo_sapiens 0 2639
ENST00000584669 TOP3A-011 processed_transcript Homo_sapiens 0 473

Loading