C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) III alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000580095 TOP3A-020 ENSG00000177302 9606 - 17:18274804-18314703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverOvaryPlacentaTestisENST00000580095
Transcript ID Breast Kidney Liver Ovary Placenta Testis
ENST00000580095 0.402±0.00 0.392±0.00 1.386±0.00 2.021±0.33 2.857±0.00 3.565±2.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K3 CIL_0005K3_0001 CGP 17:18260534-18315007
CIL_00002B CIL_00002B_0002 CGP 17:18271428-18323203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003916 IEA DNA topoisomerase activity
GO:0003917 IDA DNA topoisomerase type I activity
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005694 IEA chromosome
GO:0006265 IDA:IEA DNA topological change
GO:0007126 TAS meiotic nuclear division
GO:0008270 IEA zinc ion binding
GO:0016605 IDA PML body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002891 Top3a-002 protein_coding Mus_musculus 0 3049
ENSMUST00000102668 Top3a-003 protein_coding Mus_musculus 0 2940
ENSMUST00000117743 Top3a-001 protein_coding Mus_musculus 0 2573
ENSMUST00000120417 Top3a-006 protein_coding Mus_musculus 0 2359
ENSMUST00000124799 Top3a-005 retained_intron Mus_musculus 0 466
ENSMUST00000130068 Top3a-004 protein_coding Mus_musculus 0 219

Loading