C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) III alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000584582 TOP3A-010 ENSG00000177302 9606 - 17:18274228-18314993 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLiverOvaryPlacentaTestisENST00000584582
Transcript ID Adipose Brain Colon Kidney Liver Ovary Placenta Testis
ENST00000584582 0.946±0.00 1.301±0.00 1.049±0.00 1.900±0.00 0.771±0.00 1.348±0.00 1.564±0.00 2.921±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K3 CIL_0005K3_0001 CGP 17:18260534-18315007
CIL_00002B CIL_00002B_0002 CGP 17:18271428-18323203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003917 IEA DNA topoisomerase type I activity
GO:0006265 IEA DNA topological change

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002891 Top3a-002 protein_coding Mus_musculus 0 2752
ENSMUST00000102668 Top3a-003 protein_coding Mus_musculus 0 2639
ENSMUST00000117743 Top3a-001 protein_coding Mus_musculus 0 2272
ENSMUST00000120417 Top3a-006 protein_coding Mus_musculus 0 2058
ENSMUST00000124799 Top3a-005 retained_intron Mus_musculus 0 466
ENSMUST00000130068 Top3a-004 protein_coding Mus_musculus 3e-23 115

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