C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103008 Sdcbp-002 ENSMUSG00000028249 10090 + 4:6365677-6395655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103008
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103008 44.647±7.87 14.723±2.79 71.873±6.17 32.997±12.13 30.974±8.28 23.121±3.81 24.185±3.82 28.535±3.03 37.502±28.88 49.501±7.43 11.544±2.20 34.005±13.47 52.534±24.27 12.199±5.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T7 CIL_0001T7_0002 CGP 4:6265612-6408423
CIL_0002RG CIL_0002RG_0002 CGP 4:6365650-6454271

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007265 IPI Ras protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260130 SDCBP-001 protein_coding Homo_sapiens 0 1500
ENST00000413219 SDCBP-002 protein_coding Homo_sapiens 0 1495
ENST00000424270 SDCBP-004 protein_coding Homo_sapiens 0 1147
ENST00000424643 SDCBPP2-001 processed_pseudogene Homo_sapiens 0 715
ENST00000447182 SDCBP-003 protein_coding Homo_sapiens 0 1515
ENST00000447267 SDCBP-012 protein_coding Homo_sapiens 0 217
ENST00000519115 SDCBP-013 retained_intron Homo_sapiens 0 641
ENST00000520168 SDCBP-006 protein_coding Homo_sapiens 0 224
ENST00000520228 SDCBP-009 retained_intron Homo_sapiens 0 385
ENST00000522243 SDCBP-008 processed_transcript Homo_sapiens 2e-28 130
ENST00000522843 SDCBP-010 retained_intron Homo_sapiens 0 416
ENST00000523483 SDCBP-005 protein_coding Homo_sapiens 0 1507

Loading