C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha 2b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103086 Itga2b-001 ENSMUSG00000034664 10090 - 11:102453297-102469883 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103086
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103086 0.616±0.00 0.900±0.00 3.122±0.68 0.401±0.20 1.052±0.58 0.780±0.25 8.107±8.21 2.940±0.44 0.109±0.06 0.673±0.00 1.819±0.86 0.547±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0004D6 CIL_0004D6_0003 CGP 11:102436981-102470122
CIL_0005IZ CIL_0005IZ_0002 CGP 11:102453297-102556392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002687 IEA positive regulation of leukocyte migration
GO:0005515 IEA protein binding
GO:0005925 IDA focal adhesion
GO:0007160 IMP cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0008305 IEA integrin complex
GO:0009897 IDA external side of plasma membrane
GO:0009986 IEA cell surface
GO:0042802 IEA identical protein binding
GO:0046872 IEA metal ion binding
GO:0050840 IMP extracellular matrix binding
GO:0070051 IEA fibrinogen binding
GO:0070062 IEA extracellular vesicular exosome
GO:0070527 IEA platelet aggregation
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262407 ITGA2B-001 protein_coding Homo_sapiens 0 2691
ENST00000587295 ITGA2B-011 protein_coding Homo_sapiens 0 222
ENST00000592226 ITGA2B-004 retained_intron Homo_sapiens 0 656
ENST00000592462 ITGA2B-003 retained_intron Homo_sapiens 0 1334

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