C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin beta 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106460 Itgb4-003 ENSMUSG00000020758 10090 + 11:115974979-116008412 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryENSMUST00000106460
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000106460 0.988±0.44 1.103±0.00 2.059±0.53 7.252±1.46 0.415±0.23 0.502±0.00 0.073±0.04 1.221±0.00 0.382±0.23 1.879±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K8 CIL_0002K8_0003 CGP 11:115933282-116008412
CIL_00078P CIL_00078P_0002 CGP 11:115974709-116012719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005604 IDA basement membrane
GO:0007155 IMP cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IDA integrin complex
GO:0009611 ISS response to wounding
GO:0009925 IDA basal plasma membrane
GO:0030056 IDA hemidesmosome
GO:0031252 ISS cell leading edge
GO:0043235 ISO receptor complex
GO:0046847 IMP filopodium assembly
GO:0048870 ISS cell motility

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000029308 itgb4-001 protein_coding Danio_rerio 0 281
ENST00000200181 ITGB4-001 protein_coding Homo_sapiens 0 4494
ENST00000449880 ITGB4-003 protein_coding Homo_sapiens 0 5869
ENST00000450894 ITGB4-002 protein_coding Homo_sapiens 0 4735
ENST00000578318 ITGB4-014 protein_coding Homo_sapiens 9e-32 141
ENST00000579211 ITGB4-013 retained_intron Homo_sapiens 0 244
ENST00000579662 ITGB4-007 protein_coding Homo_sapiens 0 4785
ENST00000580542 ITGB4-004 retained_intron Homo_sapiens 0 2920
ENST00000583327 ITGB4-011 protein_coding Homo_sapiens 0 569
ENST00000584025 ITGB4-010 retained_intron Homo_sapiens 0 355
ENST00000584374 ITGB4-009 processed_transcript Homo_sapiens 0 948
ENST00000584558 ITGB4-005 processed_transcript Homo_sapiens 0 2824
ENST00000584939 ITGB4-012 protein_coding Homo_sapiens 0 499

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