C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, beta 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000579662 ITGB4-007 ENSG00000132470 9606 + 17:75721328-75757604 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000579662
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000579662 2.042±0.00 8.263±0.00 5.356±0.00 8.127±6.55 16.532±0.00 0.541±0.00 2.856±0.00 0.110±0.00 10.050±7.85 18.241±9.53 2.193±1.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K8 CIL_0002K8_0002 CGP 17:75667116-75757818
CIL_00078P CIL_00078P_0001 CGP 17:75721328-75765711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001664 IPI G-protein coupled receptor binding
GO:0004872 IEA receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0006914 IMP autophagy
GO:0007154 IEA cell communication
GO:0007155 NAS:IEA cell adhesion
GO:0007160 IEA:IMP cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0009611 IDA response to wounding
GO:0009986 IDA cell surface
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030056 IDA hemidesmosome
GO:0030198 TAS extracellular matrix organization
GO:0031252 IDA cell leading edge
GO:0031581 IEA:IDA hemidesmosome assembly
GO:0034329 TAS cell junction assembly
GO:0035878 IMP nail development
GO:0043235 IDA receptor complex
GO:0043588 IMP skin development
GO:0048333 IEP mesodermal cell differentiation
GO:0048565 IMP digestive tract development
GO:0048870 IEA:IMP cell motility
GO:0070062 IDA extracellular vesicular exosome
GO:0072001 IMP renal system development
GO:0097186 IMP amelogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068981 Itgb4-002 protein_coding Mus_musculus 0 5718
ENSMUST00000169928 Itgb4-202 protein_coding Mus_musculus 0 4802
ENSMUST00000106460 Itgb4-003 protein_coding Mus_musculus 0 4785
ENSMUST00000021107 Itgb4-001 protein_coding Mus_musculus 0 4761
ENSMUST00000106461 Itgb4-201 protein_coding Mus_musculus 0 4597
ENSMUST00000106458 Itgb4-004 protein_coding Mus_musculus 0 4492
ENSMUST00000151691 Itgb4-005 processed_transcript Mus_musculus 0 3530
ENSMUST00000130286 Itgb4-008 processed_transcript Mus_musculus 0 464
ENSDART00000029308 itgb4-001 protein_coding Danio_rerio 0 283
ENSMUST00000150129 Itgb4-006 processed_transcript Mus_musculus 0 261

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