C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, beta 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000580542 ITGB4-004 ENSG00000132470 9606 + 17:75721509-75741105 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000580542
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000580542 1.274±0.00 0.600±0.00 4.363±0.00 7.669±0.00 0.505±0.00 0.210±0.00 3.331±0.00 4.595±0.00 7.223±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K8 CIL_0002K8_0002 CGP 17:75667116-75757818
CIL_00078P CIL_00078P_0001 CGP 17:75721328-75765711

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106461 Itgb4-201 protein_coding Mus_musculus 0 2920
ENSMUST00000106460 Itgb4-003 protein_coding Mus_musculus 0 2920
ENSMUST00000106458 Itgb4-004 protein_coding Mus_musculus 0 2916
ENSMUST00000068981 Itgb4-002 protein_coding Mus_musculus 0 2916
ENSMUST00000169928 Itgb4-202 protein_coding Mus_musculus 0 2905
ENSMUST00000151691 Itgb4-005 processed_transcript Mus_musculus 0 2905
ENSMUST00000021107 Itgb4-001 protein_coding Mus_musculus 0 2905
ENSDART00000029308 itgb4-001 protein_coding Danio_rerio 0 283
ENSMUST00000150129 Itgb4-006 processed_transcript Mus_musculus 0 261

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