C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380953 NFIB-005 ENSG00000147862 9606 - 9:14087569-14313667 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyMuscleENST00000380953
Transcript ID Bladder Kidney Muscle
ENST00000380953 8.228±0.00 5.619±0.00 4.540±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000746 CIL_000746_0001 CGP 9:13105704-14398983
CIL_0007VJ CIL_0007VJ_0001 VISTA 9:13639548-14240364
CIL_000143 CIL_000143_0001 CGP 9:14081843-14693471

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0002062 ISS chondrocyte differentiation
GO:0003677 IDA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005730 IDA nucleolus
GO:0006260 IEA DNA replication
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008285 IEA negative regulation of cell proliferation
GO:0010001 ISS glial cell differentiation
GO:0021740 ISS principal sensory nucleus of trigeminal nerve development
GO:0021960 ISS anterior commissure morphogenesis
GO:0030324 IEA lung development
GO:0030900 IEA forebrain development
GO:0030902 IEA hindbrain development
GO:0043392 IDA negative regulation of DNA binding
GO:0044300 ISS cerebellar mossy fiber
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060486 ISS Clara cell differentiation
GO:0060509 ISS Type I pneumocyte differentiation
GO:0060510 ISS Type II pneumocyte differentiation
GO:0061141 ISS lung ciliated cell differentiation
GO:0071679 ISS commissural neuron axon guidance
GO:2000791 ISS negative regulation of mesenchymal cell proliferation involved in lung development
GO:2000795 ISS negative regulation of epithelial cell proliferation involved in lung morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107245 Nfib-001 protein_coding Mus_musculus 0 3421
ENSMUST00000107247 Nfib-003 protein_coding Mus_musculus 0 2499
ENSMUST00000050872 Nfib-201 protein_coding Mus_musculus 0 2374
ENSMUST00000107248 Nfib-002 protein_coding Mus_musculus 0 2374
ENSMUST00000107246 Nfib-007 protein_coding Mus_musculus 0 2113
ENSMUST00000064770 Nfib-202 protein_coding Mus_musculus 0 2111
ENSMUST00000122918 Nfib-006 retained_intron Mus_musculus 0 2111
ENSMUST00000140874 Nfib-005 retained_intron Mus_musculus 0 1842
ENSMUST00000148982 Nfib-011 retained_intron Mus_musculus 0 1456
ENSMUST00000135024 Nfib-008 retained_intron Mus_musculus 0 1110
ENSMUST00000155821 Nfib-010 protein_coding Mus_musculus 0 682
ENSMUST00000152588 Nfib-009 processed_transcript Mus_musculus 0 337

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