C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397579 NFIB-002 ENSG00000147862 9606 - 9:14087603-14314582 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENST00000397579
Transcript ID Placenta Testis
ENST00000397579 3.327±0.00 2.179±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000746 CIL_000746_0001 CGP 9:13105704-14398983
CIL_0007VJ CIL_0007VJ_0001 VISTA 9:13639548-14240364
CIL_000143 CIL_000143_0001 CGP 9:14081843-14693471

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005730 IDA nucleolus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107246 Nfib-007 protein_coding Mus_musculus 0 3770
ENSMUST00000107247 Nfib-003 protein_coding Mus_musculus 0 2713
ENSMUST00000107248 Nfib-002 protein_coding Mus_musculus 0 2713
ENSMUST00000107245 Nfib-001 protein_coding Mus_musculus 0 2713
ENSMUST00000122918 Nfib-006 retained_intron Mus_musculus 0 2477
ENSMUST00000050872 Nfib-201 protein_coding Mus_musculus 0 2475
ENSMUST00000064770 Nfib-202 protein_coding Mus_musculus 0 2473
ENSMUST00000140874 Nfib-005 retained_intron Mus_musculus 0 2207
ENSMUST00000148982 Nfib-011 retained_intron Mus_musculus 0 2056
ENSMUST00000135024 Nfib-008 retained_intron Mus_musculus 0 1711
ENSMUST00000155821 Nfib-010 protein_coding Mus_musculus 0 682
ENSMUST00000152588 Nfib-009 processed_transcript Mus_musculus 0 337

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