C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000143_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147862-ENSG00000175893 CGP 9606 9:14081843-14693471
GeneTranscriptPositionBiotype
ENSG00000175893 (ZDHHC21)
zinc finger, DHHC-type containing 21 		ENST00000380916 (ZDHHC21-001) 14611071-14693471 protein_coding
ENST00000497966 (ZDHHC21-002) 14677366-14693265 processed_transcript
ENSG00000225472 (RP11-120J1.1)
 ENST00000416996 (RP11-120J1.1-001) 14317085-14357854 antisense
ENST00000440947 (RP11-120J1.1-002) 14347320-14357908 antisense
ENSG00000229029 (CDCA4P1)
cell division cycle associated 4 pseudogene 1 		ENST00000442667 (CDCA4P1-001) 14593577-14594200 processed_pseudogene
ENSG00000234982 (RP11-280O24.3)
 ENST00000435137 (RP11-280O24.3-001) 14204248-14205039 processed_pseudogene
ENSG00000272871 (RP11-408A13.4)
 ENST00000610061 (RP11-408A13.4-001) 14588797-14590065 lincRNA
ENSG00000273399 (RP11-408A13.3)
 ENST00000608871 (RP11-408A13.3-001) 14586766-14587326 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000143_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000008575-ENSMUSG00000028403 CGP 10090 4:82290173-82859958
GeneTranscriptPositionBiotype
ENSMUSG00000008575 (Nfib)
nuclear factor I/B 		ENSMUST00000050872 (Nfib-201) 82290173-82505308 protein_coding
ENSMUST00000064770 (Nfib-202) 82290176-82505308 protein_coding
ENSMUST00000107245 (Nfib-001) 82290173-82505770 protein_coding
ENSMUST00000107246 (Nfib-007) 82296081-82505770 protein_coding
ENSMUST00000107247 (Nfib-003) 82296048-82505707 protein_coding
ENSMUST00000107248 (Nfib-002) 82296048-82505707 protein_coding
ENSMUST00000122918 (Nfib-006) 82326825-82505310 retained_intron
ENSMUST00000135024 (Nfib-008) 82495984-82505779 retained_intron
ENSMUST00000140874 (Nfib-005) 82328594-82505310 retained_intron
ENSMUST00000148982 (Nfib-011) 82353052-82505764 retained_intron
ENSMUST00000152588 (Nfib-009) 82498544-82499316 processed_transcript
ENSMUST00000155821 (Nfib-010) 82498321-82705750 protein_coding
ENSMUSG00000028403 (Zdhhc21)
zinc finger, DHHC domain containing 21 		ENSMUST00000030110 (Zdhhc21-001) 82798738-82859673 protein_coding
ENSMUST00000107239 (Zdhhc21-004) 82806209-82859958 protein_coding
ENSMUST00000139401 (Zdhhc21-003) 82838312-82850814 protein_coding
ENSMUST00000144139 (Zdhhc21-005) 82840368-82859554 retained_intron
ENSMUST00000156055 (Zdhhc21-002) 82847617-82859573 protein_coding
ENSMUST00000173741 (Zdhhc21-006) 82804047-82859561 nonsense_mediated_decay
ENSMUSG00000084851 (Gm11267)
predicted gene 11267 		ENSMUST00000137477 (Gm11267-001) 82585048-82587319 sense_intronic
ENSMUSG00000086293 (Gm11269)
predicted gene 11269 		ENSMUST00000157011 (Gm11269-001) 82692805-82693711 antisense
ENSMUSG00000087413 (Gm11266)
predicted gene 11266 		ENSMUST00000139835 (Gm11266-001) 82508016-82547292 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000143_0001ENSG00000175893ENST00000380916ENST00000497966ENSG00000225472ENST00000416996ENST00000440947ENSG00000229029ENST00000442667ENSG00000234982ENST00000435137ENSG00000272871ENST00000610061ENSG00000273399ENST00000608871CIL_000143_0002ENSMUSG00000008575ENSMUST00000050872ENSMUST00000064770ENSMUST00000107245ENSMUST00000107246ENSMUST00000107247ENSMUST00000107248ENSMUST00000122918ENSMUST00000135024ENSMUST00000140874ENSMUST00000148982ENSMUST00000152588ENSMUST00000155821ENSMUSG00000028403ENSMUST00000030110ENSMUST00000107239ENSMUST00000139401ENSMUST00000144139ENSMUST00000156055ENSMUST00000173741ENSMUSG00000084851ENSMUST00000137477ENSMUSG00000086293ENSMUST00000157011ENSMUSG00000087413ENSMUST00000139835
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000143_0001ENSG00000175893ENST00000380916ENSG00000225472ENST00000416996ENST00000440947ENSG00000229029ENST00000442667ENSG00000234982ENST00000435137ENSG00000272871ENST00000610061ENSG00000273399ENST00000608871CIL_000143_0002ENSMUSG00000008575ENSMUST00000050872ENSMUST00000064770ENSMUST00000107245ENSMUST00000107246ENSMUST00000107247ENSMUST00000107248ENSMUSG00000028403ENSMUST00000030110ENSMUST00000107239ENSMUST00000144139ENSMUST00000173741ENSMUSG00000084851ENSMUST00000137477ENSMUSG00000086293ENSMUST00000157011ENSMUSG00000087413ENSMUST00000139835
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000175893 ENST00000380916 0.357±0.00 0.691±0.00 N/A 2.122±0.22 1.100±0.17 0.769±0.00 0.810±0.00 1.004±0.00 0.650±0.31 2.143±1.26 0.366±0.00 0.579±0.21 0.564±0.12 1.799±0.09
ENST00000497966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225472 ENST00000416996 N/A N/A 0.054±0.00 0.208±0.00 0.129±0.05 0.208±0.00 0.494±0.17 N/A 0.114±0.00 0.124±0.00 0.372±0.33 0.201±0.01 0.134±0.02 0.095±0.01
ENST00000440947 N/A 0.402±0.00 N/A 1.195±0.82 0.100±0.00 N/A 0.426±0.00 N/A 0.055±0.00 0.073±0.00 N/A 0.095±0.03 N/A 0.288±0.00
ENSG00000229029 ENST00000442667 N/A 0.311±0.00 N/A 0.225±0.00 0.144±0.00 N/A 0.171±0.00 N/A N/A 0.088±0.00 N/A 0.300±0.20 0.089±0.01 0.114±0.09
ENSG00000234982 ENST00000435137 0.088±0.00 0.468±0.00 0.163±0.00 0.129±0.00 0.167±0.02 0.181±0.00 0.123±0.10 0.097±0.00 0.105±0.00 0.339±0.06 0.184±0.00 0.178±0.14 N/A 0.208±0.00
ENSG00000272871 ENST00000610061 0.108±0.00 0.811±0.00 N/A 0.706±0.16 0.749±0.00 0.288±0.07 0.142±0.03 0.128±0.00 0.123±0.00 0.180±0.05 0.040±0.00 0.561±0.46 0.121±0.08 0.069±0.01
ENSG00000273399 ENST00000608871 N/A 0.291±0.00 N/A 0.022±0.00 0.484±0.32 N/A 0.039±0.00 0.102±0.00 N/A N/A N/A 0.452±0.32 N/A 0.077±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008575 ENSMUST00000050872 4.890±1.65 3.903±1.13 1.975±0.45 7.048±1.28 3.093±0.42 2.597±0.61 N/A 2.273±0.44 2.282±2.04 8.668±1.01 N/A 2.321±0.67 0.367±0.16 0.207±0.07
ENSMUST00000064770 10.002±0.90 7.984±0.52 11.134±0.93 14.473±7.32 8.227±1.08 2.632±0.51 14.837±1.78 4.922±0.77 2.497±1.34 17.975±1.07 6.318±1.68 4.755±1.35 0.948±0.52 0.347±0.08
ENSMUST00000107245 2.949±0.01 1.607±0.03 3.258±0.97 N/A 1.604±0.29 0.920±0.27 N/A 0.778±0.00 0.297±0.01 3.826±0.17 1.345±0.00 1.116±0.26 0.426±0.20 0.126±0.01
ENSMUST00000107246 N/A N/A N/A 10.268±0.00 N/A N/A N/A N/A N/A N/A N/A 10.689±0.00 1.163±0.56 0.913±0.00
ENSMUST00000107247 N/A 2.390±0.71 N/A N/A 3.519±0.76 1.423±0.41 N/A 2.195±0.42 2.177±0.23 N/A N/A 2.219±0.56 N/A 0.131±0.00
ENSMUST00000107248 4.863±0.00 1.634±0.12 N/A N/A 3.194±1.26 1.247±0.00 N/A N/A 3.614±0.00 N/A N/A 1.422±0.42 N/A 0.202±0.00
ENSMUST00000122918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028403 ENSMUST00000030110 1.096±0.62 1.761±0.54 1.155±0.21 1.972±1.33 0.796±0.12 2.424±0.94 0.512±0.00 0.798±0.10 0.736±0.58 0.997±0.34 0.956±0.43 2.611±0.69 3.634±2.38 0.590±0.10
ENSMUST00000107239 1.521±0.00 N/A N/A N/A N/A 4.111±0.70 N/A N/A 2.902±0.00 3.004±0.00 N/A 3.562±0.60 N/A N/A
ENSMUST00000139401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144139 0.811±0.33 0.705±0.11 N/A 1.533±0.38 1.095±0.32 N/A 0.463±0.04 0.854±0.16 0.795±0.26 1.360±0.40 N/A 1.407±0.61 N/A 1.373±0.65
ENSMUST00000156055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173741 1.831±0.00 2.264±0.67 N/A N/A 1.292±0.12 N/A N/A N/A 0.946±0.08 N/A N/A 1.998±0.16 N/A N/A
ENSMUSG00000084851 ENSMUST00000137477 N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A 0.074±0.03
ENSMUSG00000086293 ENSMUST00000157011 N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.947±2.71
ENSMUSG00000087413 ENSMUST00000139835 1.072±0.60 1.855±0.38 1.891±0.62 4.815±3.78 0.924±0.21 0.275±0.13 1.244±0.12 0.154±0.04 0.601±0.19 0.827±0.45 3.155±0.51 0.717±0.47 0.061±0.05 0.069±0.04

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