C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 59
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543469 TRIM59-201 ENSG00000213186 9606 - 3:160432445-160448937 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleTestisENST00000543469
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000543469 0.888±0.00 1.072±0.00 1.295±0.00 1.010±0.00 1.834±0.00 0.729±0.00 1.826±0.00 0.538±0.00 3.290±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0002 CGP 3:160256986-160434962
CIL_0004JQ CIL_0004JQ_0002 CGP 3:160399274-160485773
CIL_0001ZB CIL_0001ZB_0001 CGP 3:160432445-160565588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136512 Trim59-002 protein_coding Mus_musculus 0 1075
ENSMUST00000107802 Trim59-001 protein_coding Mus_musculus 0 1075
ENSMUST00000121501 Gm15381-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000148385 Smc4-002 nonsense_mediated_decay Mus_musculus 1.00053e-42 180
ENSMUST00000107803 Smc4-004 protein_coding Mus_musculus 1.00053e-42 180
ENSMUST00000042901 Smc4-001 protein_coding Mus_musculus 1.00053e-42 180

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