C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 59
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309784 TRIM59-001 ENSG00000213186 9606 - 3:160435503-160449829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000309784
Transcript ID Brain
ENST00000309784 2.812±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0002 CGP 3:160256986-160434962
CIL_0004JQ CIL_0004JQ_0002 CGP 3:160399274-160485773
CIL_0001ZB CIL_0001ZB_0001 CGP 3:160432445-160565588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0043124 IMP negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107802 Trim59-001 protein_coding Mus_musculus 0 1297
ENSMUST00000136512 Trim59-002 protein_coding Mus_musculus 0 1245
ENSMUST00000121501 Gm15381-001 processed_pseudogene Mus_musculus 0 1035

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