C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TCF3 (E2A) fusion partner (in childhood Leukemia)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000391759 TFPT-003 ENSG00000105619 9606 - 19:54107013-54115675 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyOvaryPlacentaTestisENST00000391759
Transcript ID Brain Kidney Ovary Placenta Testis
ENST00000391759 4.746±0.00 2.286±0.00 5.961±3.83 22.756±0.00 9.445±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00021A CIL_00021A_0001 CGP 19:54094668-54109257
CIL_0005NN CIL_0005NN_0001 CGP 19:54102728-54115675
CIL_0005O3 CIL_0005O3_0001 CGP 19:54107013-54131719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS nucleus
GO:0005730 IDA nucleolus
GO:0005737 ISS cytoplasm
GO:0005884 IEA actin filament
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0019901 IEA protein kinase binding
GO:0031011 IDA Ino80 complex
GO:0043065 IEA positive regulation of apoptotic process
GO:0046982 IEA protein heterodimerization activity
GO:0097190 IDA apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000155592 Tfpt-002 protein_coding Mus_musculus 0 889
ENSMUST00000108641 Tfpt-001 protein_coding Mus_musculus 0 817
ENSMUST00000058880 Tfpt-005 nonsense_mediated_decay Mus_musculus 0 547
ENSMUST00000153143 Tfpt-003 nonsense_mediated_decay Mus_musculus 0 449
ENSMUST00000156194 Tfpt-004 processed_transcript Mus_musculus 0 387

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