C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 35, member C2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109300 Slc35c2-012 ENSMUSG00000017664 10090 - 2:165276554-165287869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109300
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109300 10.588±0.57 18.675±2.79 9.168±0.55 10.801±2.04 14.819±7.34 9.076±1.79 4.623±0.40 9.504±0.99 9.737±3.65 8.535±0.75 4.510±1.35 10.869±1.90 11.639±1.08 8.856±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BF CIL_0007BF_0002 CGP 2:165111507-165287869
CIL_0006G4 CIL_0006G4_0002 CGP 2:165276554-165326479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005793 ISO endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0005801 ISO cis-Golgi network
GO:0006810 IEA transport
GO:0010629 IDA negative regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0036065 IDA fucosylation
GO:0036066 IDA protein O-linked fucosylation
GO:0045747 IDA positive regulation of Notch signaling pathway
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243896 SLC35C2-002 protein_coding Homo_sapiens 0 1345
ENST00000317734 SLC35C2-201 protein_coding Homo_sapiens 0 1345
ENST00000372227 SLC35C2-003 protein_coding Homo_sapiens 0 1345
ENST00000372230 SLC35C2-013 protein_coding Homo_sapiens 0 1345
ENST00000420518 SLC35C2-006 protein_coding Homo_sapiens 0 414
ENST00000424568 SLC35C2-007 protein_coding Homo_sapiens 0 420
ENST00000426556 RP11-716A19.3-001 processed_pseudogene Homo_sapiens 0 577
ENST00000480329 SLC35C2-009 processed_transcript Homo_sapiens 0 658
ENST00000481809 SLC35C2-011 processed_transcript Homo_sapiens 0 357
ENST00000484318 SLC35C2-012 processed_transcript Homo_sapiens 0 704
ENST00000487729 SLC35C2-010 processed_transcript Homo_sapiens 0 688
ENST00000493599 SLC35C2-004 processed_transcript Homo_sapiens 0 396
ENST00000543605 SLC35C2-001 protein_coding Homo_sapiens 0 771

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