C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor co-repressor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111393 Ncor2-001 ENSMUSG00000029478 10090 - 5:125017155-125179180 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000111393
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000111393 13.791±0.00 15.431±11.68 7.033±1.42 2.467±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PN CIL_0004PN_0002 CGP 5:125003447-125179219
CIL_000399 CIL_000399_0002 CGP 5:125017153-125341094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IMP in utero embryonic development
GO:0003007 IGI heart morphogenesis
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003714 IMP transcription corepressor activity
GO:0005515 IPI protein binding
GO:0016604 IDA nuclear body
GO:0021537 IMP telencephalon development
GO:0021846 IMP cell proliferation in forebrain
GO:0030900 IMP forebrain development
GO:0042593 IMP glucose homeostasis
GO:0043565 IDA sequence-specific DNA binding
GO:0045599 IMP negative regulation of fat cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0050872 IMP white fat cell differentiation
GO:0060509 IGI Type I pneumocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356219 NCOR2-201 protein_coding Homo_sapiens 0 5029
ENST00000404121 NCOR2-202 protein_coding Homo_sapiens 0 5029
ENST00000404621 NCOR2-002 protein_coding Homo_sapiens 0 4047
ENST00000405201 NCOR2-005 protein_coding Homo_sapiens 0 4924
ENST00000413172 NCOR2-018 protein_coding Homo_sapiens 0 593
ENST00000420698 NCOR2-004 protein_coding Homo_sapiens 0 1611
ENST00000429285 NCOR2-001 protein_coding Homo_sapiens 0 4933
ENST00000440187 NCOR2-013 protein_coding Homo_sapiens 0 292
ENST00000440337 NCOR2-015 protein_coding Homo_sapiens 0 359
ENST00000443451 NCOR2-022 retained_intron Homo_sapiens 0 603
ENST00000448008 NCOR2-019 protein_coding Homo_sapiens 0 516
ENST00000448614 NCOR2-009 protein_coding Homo_sapiens 0 289
ENST00000453428 NCOR2-012 protein_coding Homo_sapiens 0 298
ENST00000458234 NCOR2-003 protein_coding Homo_sapiens 0 2350
ENST00000461081 NCOR2-006 retained_intron Homo_sapiens 0 521
ENST00000464377 NCOR2-016 retained_intron Homo_sapiens 0 531
ENST00000474079 NCOR2-014 retained_intron Homo_sapiens 0 289
ENST00000494460 NCOR2-007 retained_intron Homo_sapiens 4e-37 158
ENST00000542927 NCOR2-024 protein_coding Homo_sapiens 0 955

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