C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor corepressor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356219 NCOR2-201 ENSG00000196498 9606 - 12:124324416-124422554 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonOvaryTestisENST00000356219
Transcript ID Adrenal Brain Breast Colon Ovary Testis
ENST00000356219 6.195±0.00 4.425±0.00 1.227±0.00 6.596±6.01 49.590±0.00 4.299±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000399 CIL_000399_0001 CGP 12:124324415-124882668

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003714 IMP transcription corepressor activity
GO:0005112 IPI Notch binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016363 IDA nuclear matrix
GO:0016604 IDA nuclear body
GO:0017053 IDA transcriptional repressor complex
GO:0042826 IPI histone deacetylase binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0047485 IPI protein N-terminus binding
GO:0072365 IMP regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111402 Ncor2-201 protein_coding Mus_musculus 0 5029
ENSMUST00000111393 Ncor2-001 protein_coding Mus_musculus 0 5029
ENSMUST00000125053 Ncor2-007 protein_coding Mus_musculus 0 4929
ENSMUST00000086083 Ncor2-004 protein_coding Mus_musculus 0 4342
ENSMUST00000111398 Ncor2-002 protein_coding Mus_musculus 0 4300
ENSMUST00000111394 Ncor2-008 protein_coding Mus_musculus 0 4061
ENSMUST00000055256 Ncor2-003 protein_coding Mus_musculus 0 4061
ENSMUST00000134404 Ncor2-005 protein_coding Mus_musculus 0 1783
ENSMUST00000138890 Ncor2-012 protein_coding Mus_musculus 0 577
ENSMUST00000149968 Ncor2-006 processed_transcript Mus_musculus 0 377
ENSDART00000051139 ncor2-201 protein_coding Danio_rerio 0 219
ENSDART00000140618 ncor2-002 protein_coding Danio_rerio 0 219
ENSDART00000001092 ncor2-001 protein_coding Danio_rerio 0 219
ENSMUST00000134819 Ncor2-009 protein_coding Mus_musculus 8e-37 161

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