C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor corepressor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405201 NCOR2-005 ENSG00000196498 9606 - 12:124324415-124495252 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungOvaryPlacentaTestisENST00000405201
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENST00000405201 7.788±0.00 0.476±0.00 4.550±3.76 6.267±0.00 3.530±0.00 1.154±0.00 7.910±0.00 12.948±5.21 3.997±2.13 3.398±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000399 CIL_000399_0001 CGP 12:124324415-124882668

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IEA chromatin
GO:0001012 IEA RNA polymerase II regulatory region DNA binding
GO:0001701 IEA in utero embryonic development
GO:0003007 IEA heart morphogenesis
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003714 IMP transcription corepressor activity
GO:0005112 IPI Notch binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0007595 IEA lactation
GO:0010243 IEA response to organonitrogen compound
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016363 IDA nuclear matrix
GO:0016604 IDA nuclear body
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0017053 IDA transcriptional repressor complex
GO:0021537 IEA telencephalon development
GO:0021846 IEA cell proliferation in forebrain
GO:0030900 IEA forebrain development
GO:0032355 IEA response to estradiol
GO:0032403 IEA protein complex binding
GO:0035259 IEA glucocorticoid receptor binding
GO:0042593 IEA glucose homeostasis
GO:0042698 IEA ovulation cycle
GO:0042826 IPI histone deacetylase binding
GO:0042974 IEA retinoic acid receptor binding
GO:0043565 IEA sequence-specific DNA binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045599 IEA negative regulation of fat cell differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046965 IEA retinoid X receptor binding
GO:0047485 IPI protein N-terminus binding
GO:0050872 IEA white fat cell differentiation
GO:0060206 IEA estrous cycle phase
GO:0060509 IEA Type I pneumocyte differentiation
GO:0072365 IMP regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111402 Ncor2-201 protein_coding Mus_musculus 0 4924
ENSMUST00000111393 Ncor2-001 protein_coding Mus_musculus 0 4924
ENSMUST00000125053 Ncor2-007 protein_coding Mus_musculus 0 4824
ENSMUST00000086083 Ncor2-004 protein_coding Mus_musculus 0 4342
ENSMUST00000111398 Ncor2-002 protein_coding Mus_musculus 0 4300
ENSMUST00000111394 Ncor2-008 protein_coding Mus_musculus 0 4061
ENSMUST00000055256 Ncor2-003 protein_coding Mus_musculus 0 4061
ENSMUST00000134404 Ncor2-005 protein_coding Mus_musculus 0 1677
ENSDART00000051139 ncor2-201 protein_coding Danio_rerio 0 937
ENSMUST00000138890 Ncor2-012 protein_coding Mus_musculus 0 577
ENSDART00000140618 ncor2-002 protein_coding Danio_rerio 0 392
ENSDART00000001092 ncor2-001 protein_coding Danio_rerio 0 392
ENSMUST00000149968 Ncor2-006 processed_transcript Mus_musculus 0 377
ENSMUST00000134819 Ncor2-009 protein_coding Mus_musculus 9e-37 161

Loading