C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor co-repressor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111398 Ncor2-002 ENSMUSG00000029478 10090 - 5:125017153-125179219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111398
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111398 2.075±0.89 8.844±1.42 0.652±0.00 3.135±2.07 2.726±2.20 1.600±0.34 1.674±0.52 1.645±0.40 0.474±0.18 2.968±1.00 2.152±0.57 3.578±0.44 1.290±0.11 1.651±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PN CIL_0004PN_0002 CGP 5:125003447-125179219
CIL_000399 CIL_000399_0002 CGP 5:125017153-125341094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IMP in utero embryonic development
GO:0003007 IGI heart morphogenesis
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003714 IMP transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016363 ISS nuclear matrix
GO:0016604 IDA nuclear body
GO:0021537 IMP telencephalon development
GO:0021846 IMP cell proliferation in forebrain
GO:0030900 IMP forebrain development
GO:0042593 IMP glucose homeostasis
GO:0043565 IDA sequence-specific DNA binding
GO:0045599 IMP negative regulation of fat cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0050872 IMP white fat cell differentiation
GO:0060509 IGI Type I pneumocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356219 NCOR2-201 protein_coding Homo_sapiens 0 4300
ENST00000404121 NCOR2-202 protein_coding Homo_sapiens 0 4300
ENST00000404621 NCOR2-002 protein_coding Homo_sapiens 0 3319
ENST00000405201 NCOR2-005 protein_coding Homo_sapiens 0 4300
ENST00000413172 NCOR2-018 protein_coding Homo_sapiens 0 593
ENST00000420698 NCOR2-004 protein_coding Homo_sapiens 0 1738
ENST00000429285 NCOR2-001 protein_coding Homo_sapiens 0 4204
ENST00000440187 NCOR2-013 protein_coding Homo_sapiens 0 292
ENST00000440337 NCOR2-015 protein_coding Homo_sapiens 0 359
ENST00000443451 NCOR2-022 retained_intron Homo_sapiens 0 603
ENST00000448008 NCOR2-019 protein_coding Homo_sapiens 0 516
ENST00000448614 NCOR2-009 protein_coding Homo_sapiens 0 289
ENST00000453428 NCOR2-012 protein_coding Homo_sapiens 0 298
ENST00000458234 NCOR2-003 protein_coding Homo_sapiens 0 2494
ENST00000461081 NCOR2-006 retained_intron Homo_sapiens 0 521
ENST00000464377 NCOR2-016 retained_intron Homo_sapiens 0 531
ENST00000474079 NCOR2-014 retained_intron Homo_sapiens 0 289
ENST00000494460 NCOR2-007 retained_intron Homo_sapiens 4e-37 158
ENST00000542927 NCOR2-024 protein_coding Homo_sapiens 0 955

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