C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein, fox-1 homolog (C. elegans) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311745 RBFOX1-001 ENSG00000078328 9606 + 16:7332750-7712504 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverOvaryTestisENST00000311745
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Ovary Testis
ENST00000311745 0.004±0.00 0.035±0.00 6.570±0.00 0.090±0.00 3.975±0.00 0.076±0.00 0.082±0.00 0.115±0.00 0.321±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EQ CIL_0000EQ_0001 CGP 16:5084304-7713338
CIL_000882 CIL_000882_0001 VISTA 16:5441186-6042172
CIL_0000EP CIL_0000EP_0001 CGP 16:6019094-8590193

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005802 IDA trans-Golgi network
GO:0006397 IEA mRNA processing
GO:0008022 IPI protein C-terminus binding
GO:0008380 IEA RNA splicing
GO:0043484 IEA regulation of RNA splicing
GO:0050658 NAS RNA transport
GO:0050885 IEA neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056416 Rbfox1-201 protein_coding Mus_musculus 0 1860
ENSMUST00000115841 Rbfox1-202 protein_coding Mus_musculus 0 1537
ENSDART00000122037 rbfox1-001 protein_coding Danio_rerio 0 551
ENSDART00000151143 rbfox1-003 protein_coding Danio_rerio 0 547
ENSDART00000150888 rbfox1-005 protein_coding Danio_rerio 0 429
ENSMUST00000111581 Rbfox2-202 protein_coding Mus_musculus 0 311
ENSMUST00000166610 Rbfox2-203 protein_coding Mus_musculus 0 311
ENSMUST00000171751 Rbfox2-204 protein_coding Mus_musculus 0 311
ENSMUST00000048145 Rbfox2-201 protein_coding Mus_musculus 0 311
ENSDART00000151546 rbfox1-006 protein_coding Danio_rerio 0 270
ENSDART00000055534 rbfox1-002 retained_intron Danio_rerio 0 219

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