C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114126 Stx18-001 ENSMUSG00000029125 10090 + 5:38038742-38137765 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonKidneyLiverOvaryTestisENSMUST00000114126
Transcript ID Adipose Colon Kidney Liver Ovary Testis
ENSMUST00000114126 1.754±0.00 1.309±0.00 1.473±0.05 0.719±0.12 2.309±0.19 2.840±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000967 CIL_000967_0002 VISTA 5:37518652-38119645
CIL_0008Y0 CIL_0008Y0_0002 VISTA 5:37525669-38129220
CIL_0008DJ CIL_0008DJ_0002 VISTA 5:37551391-38152218
CIL_000969 CIL_000969_0002 VISTA 5:37601106-38202493
CIL_00096C CIL_00096C_0002 VISTA 5:37617742-38218594
CIL_00096B CIL_00096B_0002 VISTA 5:37667623-38269196
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019904 IPI protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306200 STX18-001 protein_coding Homo_sapiens 0 1253
ENST00000503692 STX18-003 retained_intron Homo_sapiens 5e-31 141
ENST00000503861 STX18-006 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000505286 STX18-002 protein_coding Homo_sapiens 0 1118
ENST00000507908 STX18-004 protein_coding Homo_sapiens 0 628
ENST00000512195 STX18-007 protein_coding Homo_sapiens 0 558
ENST00000512780 STX18-005 retained_intron Homo_sapiens 0 606
ENST00000515687 STX18-009 retained_intron Homo_sapiens 0 364
ENST00000583091 RP11-1148O4.1-001 transcribed_processed_pseudogene Homo_sapiens 0 1114

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