C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GA repeat binding protein, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114184 Gabpa-002 ENSMUSG00000008976 10090 + 16:84834925-84861315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENSMUST00000114184
Transcript ID Ovary Placenta Testis
ENSMUST00000114184 16.425±0.00 16.772±7.21 16.036±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ML CIL_0000ML_0003 CGP 16:84774123-84835625
CIL_0000RF CIL_0000RF_0002 CGP 16:84827866-84863779
CIL_0000MM CIL_0000MM_0003 CGP 16:84834925-85173707

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001701 IMP in utero embryonic development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0044212 ISO transcription regulatory region DNA binding
GO:0045653 IMP negative regulation of megakaryocyte differentiation
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0046982 ISO protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354828 GABPA-002 protein_coding Homo_sapiens 0 2350
ENST00000400075 GABPA-001 protein_coding Homo_sapiens 0 2209
ENST00000400093 ATP5J-002 protein_coding Homo_sapiens 2e-25 121
ENST00000419271 RP11-340I6.6-001 processed_pseudogene Homo_sapiens 0 1696
ENST00000487266 GABPA-003 processed_transcript Homo_sapiens 0 604

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