C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin A4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115096 Plxna4-001 ENSMUSG00000029765 10090 - 6:32144268-32588192 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115096
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115096 1.326±0.58 0.913±0.17 1.421±0.59 5.271±1.95 0.337±0.15 0.569±0.05 1.444±0.28 0.735±0.15 0.141±0.05 4.195±0.33 0.355±0.07 2.536±0.63 1.019±1.36 0.281±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024M CIL_00024M_0003 CGP 6:32144268-33060260

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005886 ISS plasma membrane
GO:0007399 IGI nervous system development
GO:0007411 IMP axon guidance
GO:0008045 IMP motor neuron axon guidance
GO:0016021 IEA integral component of membrane
GO:0017154 IGI semaphorin receptor activity
GO:0021602 IMP cranial nerve morphogenesis
GO:0021610 IMP facial nerve morphogenesis
GO:0021612 IMP facial nerve structural organization
GO:0021615 IMP glossopharyngeal nerve morphogenesis
GO:0021636 IMP trigeminal nerve morphogenesis
GO:0021637 IMP trigeminal nerve structural organization
GO:0021644 IMP vagus nerve morphogenesis
GO:0021784 IMP postganglionic parasympathetic nervous system development
GO:0021785 IMP branchiomotor neuron axon guidance
GO:0021793 IMP chemorepulsion of branchiomotor axon
GO:0021960 IMP anterior commissure morphogenesis
GO:0048485 IMP sympathetic nervous system development
GO:0048812 IMP neuron projection morphogenesis
GO:0048841 IMP regulation of axon extension involved in axon guidance
GO:0050923 IMP regulation of negative chemotaxis
GO:0071526 IGI semaphorin-plexin signaling pathway
GO:1902287 IMP semaphorin-plexin signaling pathway involved in axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109152 protein_coding Danio_rerio 0 968
ENSDART00000016230 plxna4-001 protein_coding Danio_rerio 5e-31 143
ENST00000321063 PLXNA4-201 protein_coding Homo_sapiens 0 7727
ENST00000359827 PLXNA4-001 protein_coding Homo_sapiens 0 8645
ENST00000367033 PLXNA2-001 protein_coding Homo_sapiens 0 1507
ENST00000369682 PLXNA3-001 protein_coding Homo_sapiens 0 1107
ENST00000378539 PLXNA4-002 protein_coding Homo_sapiens 0 1626
ENST00000393409 PLXNA1-001 protein_coding Homo_sapiens 0 1334
ENST00000423507 PLXNA4-004 protein_coding Homo_sapiens 0 1674
ENST00000463510 PLXNA2-004 processed_transcript Homo_sapiens 0 287
ENST00000483048 PLXNA2-002 processed_transcript Homo_sapiens 0 353
ENST00000491066 PLXNA3-003 retained_intron Homo_sapiens 0 202
ENST00000496550 PLXNA4-005 retained_intron Homo_sapiens 0 529
ENST00000503234 PLXNA1-002 retained_intron Homo_sapiens 0 904
ENST00000505278 PLXNA1-004 processed_transcript Homo_sapiens 0 342

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