C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115449 Sema6a-201 ENSMUSG00000019647 10090 - 18:47245255-47368868 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonOvaryPlacentaENSMUST00000115449
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Ovary Placenta
ENSMUST00000115449 1.462±0.04 1.267±0.24 0.255±0.00 1.687±0.77 0.691±0.05 1.004±0.26 0.656±0.36 0.528±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L9 CIL_0004L9_0002 CGP 18:46958862-47368870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007166 IDA cell surface receptor signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0016021 IEA integral component of membrane
GO:0030215 IPI semaphorin receptor binding
GO:0051642 IMP centrosome localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257414 SEMA6A-002 protein_coding Homo_sapiens 0 2030
ENST00000343348 SEMA6A-001 protein_coding Homo_sapiens 0 2361
ENST00000502996 SEMA6A-011 processed_transcript Homo_sapiens 0.00001 55
ENST00000503402 SEMA6A-012 retained_intron Homo_sapiens 0 424
ENST00000503865 SEMA6A-006 protein_coding Homo_sapiens 0 1744
ENST00000503962 SEMA6A-010 processed_transcript Homo_sapiens 0 706
ENST00000506114 SEMA6A-014 processed_transcript Homo_sapiens 0 619
ENST00000509665 SEMA6A-009 protein_coding Homo_sapiens 0 556
ENST00000510263 SEMA6A-003 protein_coding Homo_sapiens 0 2134
ENST00000513137 SEMA6A-005 protein_coding Homo_sapiens 0 2069
ENST00000514316 SEMA6A-015 processed_transcript Homo_sapiens 0 263
ENST00000515009 SEMA6A-008 protein_coding Homo_sapiens 0 697
ENST00000515129 SEMA6A-004 protein_coding Homo_sapiens 0 1866

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