C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: islet cell autoantigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115519 Ica1-006 ENSMUSG00000062995 10090 - 6:8630527-8778154 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyLiverLungMuscleOvaryPlacentaENSMUST00000115519
Transcript ID Adipose Adrenal Breast Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000115519 0.670±0.32 1.055±0.29 0.468±0.17 0.710±0.00 0.506±0.40 1.547±0.53 0.366±0.19 1.208±0.49 1.645±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EL CIL_0002EL_0002 CGP 6:8509600-8778488
CIL_0002VG CIL_0002VG_0002 CGP 6:8630527-9249032

Gene Ontology

GO IDEvidence TypeGO Description
GO:0019904 IEA protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265577 ICA1-002 protein_coding Homo_sapiens 0 1271
ENST00000317367 ICA1-008 protein_coding Homo_sapiens 0 1037
ENST00000339809 ICA1-004 nonsense_mediated_decay Homo_sapiens 0 985
ENST00000396675 ICA1-007 protein_coding Homo_sapiens 0 1140
ENST00000401396 ICA1-006 protein_coding Homo_sapiens 0 1107
ENST00000402384 ICA1-001 protein_coding Homo_sapiens 0 1256
ENST00000406470 ICA1-201 protein_coding Homo_sapiens 0 1194
ENST00000407906 ICA1-003 protein_coding Homo_sapiens 0 1123
ENST00000422063 ICA1-202 protein_coding Homo_sapiens 0 1112
ENST00000430867 ICA1-009 protein_coding Homo_sapiens 0 593
ENST00000446305 ICA1-012 protein_coding Homo_sapiens 0 359
ENST00000455539 ICA1-005 nonsense_mediated_decay Homo_sapiens 0 800
ENST00000490041 ICA1-016 retained_intron Homo_sapiens 0 372
ENST00000562640 CTD-2649C14.1-001 processed_pseudogene Homo_sapiens 0 222

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