C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15720
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117133 Gm15720-001 ENSMUSG00000082120 10090 - 6:146463326-146463607 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverOvaryPlacentaTestisENSMUST00000117133
Transcript ID Adipose Bladder Brain Kidney Liver Ovary Placenta Testis
ENSMUST00000117133 0.566±0.24 0.319±0.06 0.582±0.51 0.340±0.00 0.210±0.14 1.293±0.00 0.615±0.43 0.420±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XE CIL_0004XE_0002 CGP 6:145931641-146502223
CIL_0004XF CIL_0004XF_0002 CGP 6:146108299-146577835

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272298 CALM2-001 protein_coding Homo_sapiens 0 381
ENST00000400429 CALM2P3-001 processed_pseudogene Homo_sapiens 0 348
ENST00000409563 CALM2-007 protein_coding Homo_sapiens 0 381
ENST00000428512 CALM2P2-001 processed_pseudogene Homo_sapiens 0 335
ENST00000430810 CALM2P4-001 processed_pseudogene Homo_sapiens 0 315
ENST00000432899 CALM2-002 nonsense_mediated_decay Homo_sapiens 1e-27 128
ENST00000456319 CALM2-006 protein_coding Homo_sapiens 0 381
ENST00000460218 CALM2-003 retained_intron Homo_sapiens 0 381
ENST00000482532 CALM2-004 retained_intron Homo_sapiens 0 381
ENST00000484408 CALM2-009 processed_transcript Homo_sapiens 0 381
ENST00000489742 CALM2-008 processed_transcript Homo_sapiens 0 255
ENST00000585658 CALM2P1-001 processed_pseudogene Homo_sapiens 0 255

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