C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2W (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117146 Ube2w-001 ENSMUSG00000025939 10090 - 1:16569782-16619489 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117146
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117146 10.644±3.22 1.789±0.76 17.077±2.97 10.256±5.54 6.287±2.14 1.885±0.69 3.572±0.34 6.726±0.83 5.290±2.06 5.640±1.25 2.064±0.28 5.154±3.26 6.654±2.85 14.325±6.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NO CIL_0001NO_0002 CGP 1:16228674-16619489
CIL_0005C4 CIL_0005C4_0003 CGP 1:16540790-16657042

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006281 IEA DNA repair
GO:0006513 ISS protein monoubiquitination
GO:0006515 IMP misfolded or incompletely synthesized protein catabolic process
GO:0016881 IEA acid-amino acid ligase activity
GO:0031625 IPI ubiquitin protein ligase binding
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0070979 ISS protein K11-linked ubiquitination
GO:0071218 IMP cellular response to misfolded protein

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358757 RP11-463D19.2-001 nonsense_mediated_decay Homo_sapiens 0 728
ENST00000362030 UBE2WP1-001 processed_pseudogene Homo_sapiens 0 359
ENST00000419880 UBE2W-002 protein_coding Homo_sapiens 0 2159
ENST00000422906 UBE2W-003 nonsense_mediated_decay Homo_sapiens 0 1866
ENST00000517608 UBE2W-001 protein_coding Homo_sapiens 0 2311
ENST00000519255 UBE2W-007 nonsense_mediated_decay Homo_sapiens 0 364
ENST00000519277 UBE2W-005 nonsense_mediated_decay Homo_sapiens 0 473
ENST00000523278 UBE2W-004 protein_coding Homo_sapiens 0 662
ENST00000602593 UBE2W-008 protein_coding Homo_sapiens 0 2193

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