C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11221
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117230 Gm11221-001 ENSMUSG00000082998 10090 + 4:69691978-69692574 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverOvaryPlacentaTestisENSMUST00000117230
Transcript ID Bladder Brain Breast Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000117230 0.024±0.01 0.005±0.00 0.092±0.00 0.070±0.00 0.136±0.07 0.067±0.09 0.265±0.23 0.011±0.00 0.066±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FK CIL_0004FK_0002 CGP 4:68761514-70410443

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341162 FCF1-001 protein_coding Homo_sapiens 0 715
ENST00000448326 FCF1P4-001 processed_pseudogene Homo_sapiens 4e-20 100
ENST00000451185 FCF1P7-001 processed_pseudogene Homo_sapiens 0 472
ENST00000456841 FCF1P6-001 processed_pseudogene Homo_sapiens 0 577
ENST00000496394 FCF1P3-001 processed_pseudogene Homo_sapiens 0 457
ENST00000510322 FCF1P8-001 processed_pseudogene Homo_sapiens 0 593
ENST00000534938 FCF1-007 protein_coding Homo_sapiens 0 712
ENST00000553615 FCF1-003 protein_coding Homo_sapiens 0 634
ENST00000553673 FCF1-009 nonsense_mediated_decay Homo_sapiens 0 296
ENST00000554064 FCF1-008 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000554590 FCF1-002 protein_coding Homo_sapiens 0 462
ENST00000554973 FCF1-010 retained_intron Homo_sapiens 0 353
ENST00000556814 FCF1-006 nonsense_mediated_decay Homo_sapiens 0 492

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