C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004FK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000078725-ENSG00000136861 CGP 9606 9:119153458-120580170
GeneTranscriptPositionBiotype
ENSG00000078725 (BRINP1)
bone morphogenetic protein/retinoic acid inducible neural-specific 1 		ENST00000265922 (BRINP1-001) 119166630-119369467 protein_coding
ENST00000373964 (BRINP1-002) 119213620-119369425 protein_coding
ENST00000482797 (BRINP1-003) 119153458-119208886 processed_transcript
ENSG00000136861 (CDK5RAP2)
CDK5 regulatory subunit associated protein 2 		ENST00000349780 (CDK5RAP2-005) 120388870-120580158 protein_coding
ENST00000360190 (CDK5RAP2-014) 120388876-120580158 protein_coding
ENST00000360822 (CDK5RAP2-201) 120388869-120580170 protein_coding
ENST00000416449 (CDK5RAP2-008) 120389198-120477354 protein_coding
ENST00000425647 (CDK5RAP2-013) 120389201-120448072 protein_coding
ENST00000433194 (CDK5RAP2-003) 120389199-120403452 processed_transcript
ENST00000468989 (CDK5RAP2-018) 120439518-120440419 processed_transcript
ENST00000472883 (CDK5RAP2-011) 120527826-120539120 processed_transcript
ENST00000473282 (CDK5RAP2-012) 120389196-120580005 nonsense_mediated_decay
ENST00000474262 (CDK5RAP2-004) 120389196-120401019 retained_intron
ENST00000479584 (CDK5RAP2-009) 120439790-120458522 processed_transcript
ENST00000480112 (CDK5RAP2-016) 120389196-120580005 nonsense_mediated_decay
ENST00000480467 (CDK5RAP2-002) 120389199-120403495 processed_transcript
ENST00000481266 (CDK5RAP2-010) 120527906-120580061 nonsense_mediated_decay
ENST00000482047 (CDK5RAP2-017) 120518600-120532555 protein_coding
ENST00000483412 (CDK5RAP2-015) 120406146-120536437 retained_intron
ENST00000484546 (CDK5RAP2-001) 120389199-120403662 retained_intron
ENST00000491334 (CDK5RAP2-007) 120571747-120580170 retained_intron
ENST00000495406 (CDK5RAP2-006) 120389195-120390277 retained_intron
ENSG00000225960 (RP11-360A18.1)
 ENST00000454204 (RP11-360A18.1-001) 119973094-119974322 lincRNA
ENSG00000260970 (RP11-295D22.1)
 ENST00000565320 (RP11-295D22.1-001) 119495375-119524125 lincRNA
ENSG00000261432 (RP11-360A18.2)
 ENST00000561476 (RP11-360A18.2-001) 119935053-119937832 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004FK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028351-ENSMUSG00000039298 CGP 10090 4:68761514-70410443
GeneTranscriptPositionBiotype
ENSMUSG00000028351 (Brinp1)
bone morphogenic protein/retinoic acid inducible neural specific 1 		ENSMUST00000030036 (Brinp1-001) 68761514-68954397 protein_coding
ENSMUST00000140572 (Brinp1-003) 68826581-68829358 processed_transcript
ENSMUST00000156773 (Brinp1-002) 68795954-68841407 processed_transcript
ENSMUSG00000039298 (Cdk5rap2)
CDK5 regulatory subunit associated protein 2 		ENSMUST00000076541 (Cdk5rap2-003) 70223023-70410418 nonsense_mediated_decay
ENSMUST00000124251 (Cdk5rap2-004) 70242471-70243852 processed_transcript
ENSMUST00000126416 (Cdk5rap2-005) 70398886-70403541 processed_transcript
ENSMUST00000138561 (Cdk5rap2-006) 70238350-70264680 protein_coding
ENSMUST00000140108 (Cdk5rap2-002) 70249009-70254736 protein_coding
ENSMUST00000144099 (Cdk5rap2-001) 70216856-70410443 protein_coding
ENSMUSG00000046341 (Gm11223)
predicted gene 11223 		ENSMUST00000120560 (Gm11223-001) 69925630-69926079 processed_pseudogene
ENSMUSG00000082368 (Gm11225)
predicted gene 11225 		ENSMUST00000118903 (Gm11225-001) 70047157-70048205 processed_pseudogene
ENSMUSG00000082998 (Gm11221)
predicted gene 11221 		ENSMUST00000117230 (Gm11221-001) 69691978-69692574 processed_pseudogene
ENSMUSG00000084342 (Gm11224)
predicted gene 11224 		ENSMUST00000120465 (Gm11224-001) 69954166-69955276 processed_pseudogene
ENSMUSG00000085627 (Gm11222)
predicted gene 11222 		ENSMUST00000119005 (Gm11222-001) 69853947-69854684 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004FK_0001ENSG00000078725ENST00000265922ENST00000373964ENST00000482797ENSG00000136861ENST00000349780ENST00000360190ENST00000360822ENST00000416449ENST00000425647ENST00000433194ENST00000468989ENST00000472883ENST00000473282ENST00000474262ENST00000479584ENST00000480112ENST00000480467ENST00000481266ENST00000482047ENST00000483412ENST00000484546ENST00000491334ENST00000495406ENSG00000225960ENST00000454204ENSG00000260970ENST00000565320ENSG00000261432ENST00000561476CIL_0004FK_0002ENSMUSG00000028351ENSMUST00000030036ENSMUST00000140572ENSMUST00000156773ENSMUSG00000039298ENSMUST00000076541ENSMUST00000124251ENSMUST00000126416ENSMUST00000138561ENSMUST00000140108ENSMUST00000144099ENSMUSG00000046341ENSMUST00000120560ENSMUSG00000082368ENSMUST00000118903ENSMUSG00000082998ENSMUST00000117230ENSMUSG00000084342ENSMUST00000120465ENSMUSG00000085627ENSMUST00000119005
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004FK_0001ENSG00000078725ENST00000265922ENST00000373964ENST00000482797ENSG00000136861ENST00000349780ENST00000360190ENST00000360822ENST00000416449ENST00000425647ENST00000473282ENST00000480112ENST00000483412ENSG00000225960ENST00000454204ENSG00000260970ENST00000565320ENSG00000261432ENST00000561476CIL_0004FK_0002ENSMUSG00000028351ENSMUST00000030036ENSMUST00000140572ENSMUST00000156773ENSMUSG00000039298ENSMUST00000076541ENSMUST00000138561ENSMUST00000140108ENSMUST00000144099ENSMUSG00000046341ENSMUST00000120560ENSMUSG00000082368ENSMUST00000118903ENSMUSG00000082998ENSMUST00000117230ENSMUSG00000084342ENSMUST00000120465ENSMUSG00000085627ENSMUST00000119005
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078725 ENST00000265922 N/A 0.265±0.00 0.157±0.00 23.429±1.06 0.342±0.00 0.152±0.00 0.126±0.00 0.202±0.17 0.211±0.00 0.361±0.15 0.061±0.00 0.078±0.03 0.036±0.01 0.677±0.41
ENST00000373964 0.053±0.00 N/A 0.507±0.00 N/A N/A N/A 0.018±0.00 0.114±0.00 N/A N/A N/A N/A N/A N/A
ENST00000482797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A
ENSG00000136861 ENST00000349780 3.859±0.00 2.686±0.00 N/A 0.303±0.00 2.953±1.19 1.689±0.00 N/A 2.060±0.34 1.320±0.00 1.917±0.03 8.475±6.38 4.551±1.34 2.307±0.33 4.417±0.60
ENST00000360190 N/A N/A 0.839±0.00 0.299±0.00 1.923±0.00 2.811±0.44 1.178±0.62 N/A 0.775±0.00 N/A N/A 4.157±0.62 2.435±0.00 4.749±1.90
ENST00000360822 N/A N/A N/A 1.259±0.88 N/A N/A 1.898±0.00 N/A 0.830±0.00 N/A N/A 0.891±0.00 N/A N/A
ENST00000416449 N/A 1.873±0.00 N/A 2.855±0.00 N/A 1.888±0.00 5.017±0.00 1.551±0.00 0.926±0.00 N/A 14.386±0.00 N/A N/A N/A
ENST00000425647 2.842±0.00 4.779±0.00 N/A N/A 6.308±0.00 4.349±0.00 N/A N/A N/A 1.526±0.00 12.859±0.00 7.496±1.71 1.617±0.44 7.145±0.00
ENST00000433194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473282 N/A N/A N/A N/A N/A N/A 0.225±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000474262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480112 N/A N/A 0.445±0.00 N/A N/A N/A N/A N/A 0.511±0.00 N/A 1.338±0.00 N/A N/A N/A
ENST00000480467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483412 N/A N/A 0.439±0.00 0.411±0.00 N/A N/A 0.317±0.00 0.742±0.00 0.727±0.00 0.887±0.00 N/A 0.877±0.00 N/A N/A
ENST00000484546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225960 ENST00000454204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00
ENSG00000260970 ENST00000565320 N/A N/A N/A 0.008±0.00 N/A N/A 0.040±0.00 N/A N/A N/A N/A N/A N/A 0.044±0.01
ENSG00000261432 ENST00000561476 N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A 0.007±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028351 ENSMUST00000030036 0.114±0.03 0.305±0.06 0.422±0.07 23.773±20.67 0.095±0.05 0.033±0.01 0.068±0.04 0.099±0.04 0.147±0.06 0.575±0.23 0.018±0.00 0.142±0.06 0.096±0.06 0.128±0.03
ENSMUST00000140572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00
ENSMUST00000156773 N/A N/A N/A N/A N/A 0.041±0.03 N/A N/A N/A N/A N/A N/A 0.014±0.00 0.027±0.00
ENSMUSG00000039298 ENSMUST00000076541 1.153±0.41 4.832±1.08 1.028±0.21 1.578±0.00 1.076±0.18 1.083±0.10 0.527±0.18 0.976±0.08 1.052±0.83 0.828±0.15 0.501±0.08 5.147±2.09 3.028±1.91 30.858±14.34
ENSMUST00000124251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138561 N/A N/A N/A N/A N/A N/A N/A N/A 0.776±0.12 N/A N/A N/A N/A N/A
ENSMUST00000140108 N/A N/A N/A 55.000±0.00 N/A N/A N/A N/A 24.483±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144099 0.835±0.39 1.785±0.29 0.935±0.12 3.895±1.81 0.974±0.25 0.738±0.13 0.426±0.10 0.724±0.08 0.848±0.63 0.867±0.12 0.341±0.22 3.671±0.32 0.866±0.41 N/A
ENSMUSG00000046341 ENSMUST00000120560 0.143±0.00 N/A 0.059±0.00 12.416±17.47 N/A 0.253±0.00 0.242±0.07 N/A 1.171±2.35 0.201±0.00 N/A 0.362±0.16 0.077±0.07 0.420±0.22
ENSMUSG00000082368 ENSMUST00000118903 N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A 0.052±0.00
ENSMUSG00000082998 ENSMUST00000117230 N/A N/A 0.024±0.01 0.005±0.00 0.092±0.00 N/A 0.070±0.00 0.136±0.07 0.067±0.09 N/A N/A 0.265±0.23 0.011±0.00 0.066±0.03
ENSMUSG00000084342 ENSMUST00000120465 0.044±0.01 N/A 0.011±0.00 1.054±0.80 N/A 0.114±0.00 N/A 0.030±0.00 0.117±0.12 0.033±0.00 N/A 0.041±0.01 0.148±0.04 0.618±0.99
ENSMUSG00000085627 ENSMUST00000119005 N/A N/A N/A 0.254±0.31 N/A N/A N/A 0.073±0.00 0.041±0.04 N/A N/A N/A 0.895±0.82 0.118±0.00

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