C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-stranded DNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000622130 SSBP2-202 ENSG00000145687 9606 - 5:81419935-81751086 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000622130
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000622130 6.069±0.00 2.728±0.00 4.912±0.72 3.941±2.55 8.761±0.00 6.386±0.00 6.237±0.00 0.900±0.00 5.233±0.00 2.145±0.00 11.253±2.35 4.898±0.20 9.989±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TJ CIL_0005TJ_0002 CGP 5:81330005-81751797
CIL_0005TK CIL_0005TK_0002 CGP 5:81413021-82276857

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004094 Ssbp2-001 protein_coding Mus_musculus 0 2484
ENSMUST00000042122 Ssbp2-004 protein_coding Mus_musculus 0 1796
ENSMUST00000117239 Gm12470-001 processed_pseudogene Mus_musculus 0 1284
ENSMUST00000156547 Ssbp2-008 processed_transcript Mus_musculus 0 1186
ENSMUST00000137658 Ssbp2-009 retained_intron Mus_musculus 0 627
ENSMUST00000137493 Ssbp2-003 retained_intron Mus_musculus 0 501
ENSMUST00000144659 Ssbp2-002 retained_intron Mus_musculus 0 496
ENSMUST00000133984 Ssbp2-006 processed_transcript Mus_musculus 0 340
ENSMUST00000138488 Ssbp2-007 nonsense_mediated_decay Mus_musculus 0 315
ENSMUST00000141381 Ssbp2-005 retained_intron Mus_musculus 0 244

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