C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-stranded DNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000320672 SSBP2-001 ENSG00000145687 9606 - 5:81413021-81751253 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000320672
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000320672 0.480±0.00 0.768±0.00 1.512±0.65 0.923±0.15 1.288±0.58 0.649±0.00 0.358±0.30 0.879±0.34 1.574±1.27 0.248±0.01 0.389±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TJ CIL_0005TJ_0002 CGP 5:81330005-81751797
CIL_0005TK CIL_0005TK_0002 CGP 5:81413021-82276857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003697 NAS single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 NAS regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004094 Ssbp2-001 protein_coding Mus_musculus 0 2789
ENSMUST00000042122 Ssbp2-004 protein_coding Mus_musculus 0 1796
ENSMUST00000117239 Gm12470-001 processed_pseudogene Mus_musculus 0 1290
ENSMUST00000156547 Ssbp2-008 processed_transcript Mus_musculus 0 1194
ENSMUST00000137658 Ssbp2-009 retained_intron Mus_musculus 0 627
ENSMUST00000137493 Ssbp2-003 retained_intron Mus_musculus 0 508
ENSMUST00000144659 Ssbp2-002 retained_intron Mus_musculus 0 503
ENSMUST00000133984 Ssbp2-006 processed_transcript Mus_musculus 0 346
ENSMUST00000138488 Ssbp2-007 nonsense_mediated_decay Mus_musculus 0 344
ENSMUST00000141381 Ssbp2-005 retained_intron Mus_musculus 0 244
ENSMUST00000113229 Mob1b-001 protein_coding Mus_musculus 0.0002 55
ENSMUST00000162580 Bscl2-005 retained_intron Mus_musculus 0.0002 55

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